miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10920 3' -57.5 NC_002794.1 + 95497 0.73 0.53716
Target:  5'- -gGagGUGGACUGCGAGGUGgcCGAc -3'
miRNA:   3'- agCagCACCUGGCGCUCCGCauGCUu -5'
10920 3' -57.5 NC_002794.1 + 55211 0.73 0.560399
Target:  5'- aCGUCGUGGGCUGCGcgcagcuuuugggucGGGCGcaggucggUGCGAc -3'
miRNA:   3'- aGCAGCACCUGGCGC---------------UCCGC--------AUGCUu -5'
10920 3' -57.5 NC_002794.1 + 158078 0.71 0.635365
Target:  5'- gUCGUCGUcGGCCGC-AGGCGccucgACGAGa -3'
miRNA:   3'- -AGCAGCAcCUGGCGcUCCGCa----UGCUU- -5'
10920 3' -57.5 NC_002794.1 + 47732 0.71 0.674951
Target:  5'- gUGUCGggcgcgGGGCCGcCGGGGCGaggGCGGu -3'
miRNA:   3'- aGCAGCa-----CCUGGC-GCUCCGCa--UGCUu -5'
10920 3' -57.5 NC_002794.1 + 133980 0.69 0.752016
Target:  5'- cCGUCGUcGGcGCCGCGcGGCGagcgcgGCGAGc -3'
miRNA:   3'- aGCAGCA-CC-UGGCGCuCCGCa-----UGCUU- -5'
10920 3' -57.5 NC_002794.1 + 65413 0.69 0.752016
Target:  5'- gCGUCcguguUGGGCgGCGAGGCGcugGCGGc -3'
miRNA:   3'- aGCAGc----ACCUGgCGCUCCGCa--UGCUu -5'
10920 3' -57.5 NC_002794.1 + 78449 0.69 0.759444
Target:  5'- cCGUCGcgacccgcugcaGGagcuGCCGCGAGGCGUuGCGGAu -3'
miRNA:   3'- aGCAGCa-----------CC----UGGCGCUCCGCA-UGCUU- -5'
10920 3' -57.5 NC_002794.1 + 113822 0.69 0.770458
Target:  5'- aUCG-CGUGGGCgGCGGcGGCGgcgGCGu- -3'
miRNA:   3'- -AGCaGCACCUGgCGCU-CCGCa--UGCuu -5'
10920 3' -57.5 NC_002794.1 + 50376 0.69 0.779509
Target:  5'- -gGcCGaGGAUCGCGAggaugaGGCGUGCGAAg -3'
miRNA:   3'- agCaGCaCCUGGCGCU------CCGCAUGCUU- -5'
10920 3' -57.5 NC_002794.1 + 79906 0.68 0.797232
Target:  5'- gUGUCGccggGGACCGUGGGGgGgaGCGGGa -3'
miRNA:   3'- aGCAGCa---CCUGGCGCUCCgCa-UGCUU- -5'
10920 3' -57.5 NC_002794.1 + 77575 0.68 0.797232
Target:  5'- gCGUCGgGGACCGCGccGGGCGcguCGc- -3'
miRNA:   3'- aGCAGCaCCUGGCGC--UCCGCau-GCuu -5'
10920 3' -57.5 NC_002794.1 + 101733 0.68 0.797232
Target:  5'- gCGUCGUGuuggaagguccGACCGCGGcGGCGcuggACGGu -3'
miRNA:   3'- aGCAGCAC-----------CUGGCGCU-CCGCa---UGCUu -5'
10920 3' -57.5 NC_002794.1 + 105821 0.68 0.805886
Target:  5'- -aGUCGgacGGACgGCGAGGUGUucACGu- -3'
miRNA:   3'- agCAGCa--CCUGgCGCUCCGCA--UGCuu -5'
10920 3' -57.5 NC_002794.1 + 104593 0.68 0.830933
Target:  5'- cCGuUCGUGGACCgGCGcGGCcuGUACGu- -3'
miRNA:   3'- aGC-AGCACCUGG-CGCuCCG--CAUGCuu -5'
10920 3' -57.5 NC_002794.1 + 7621 0.68 0.830933
Target:  5'- gUCGUCGUcGACCgGCGGcGGCG-GCGGu -3'
miRNA:   3'- -AGCAGCAcCUGG-CGCU-CCGCaUGCUu -5'
10920 3' -57.5 NC_002794.1 + 185528 0.68 0.830933
Target:  5'- cCGUCGUcGGcGCCGCGAccgGGUG-ACGGAc -3'
miRNA:   3'- aGCAGCA-CC-UGGCGCU---CCGCaUGCUU- -5'
10920 3' -57.5 NC_002794.1 + 161008 0.67 0.846794
Target:  5'- gCGUCGgagcgGGcGCCGCG-GGCGccGCGGAc -3'
miRNA:   3'- aGCAGCa----CC-UGGCGCuCCGCa-UGCUU- -5'
10920 3' -57.5 NC_002794.1 + 158593 0.67 0.854452
Target:  5'- cCGUCGgcGGGCgCGCGGgcgcGGCGUACa-- -3'
miRNA:   3'- aGCAGCa-CCUG-GCGCU----CCGCAUGcuu -5'
10920 3' -57.5 NC_002794.1 + 19574 0.67 0.854452
Target:  5'- aUGgcagCGaUGGcGCCGCGAGuucGCGUACGAAc -3'
miRNA:   3'- aGCa---GC-ACC-UGGCGCUC---CGCAUGCUU- -5'
10920 3' -57.5 NC_002794.1 + 15917 0.67 0.854452
Target:  5'- aCGUCGcGGGCCG-GGGaGCGaGCGAc -3'
miRNA:   3'- aGCAGCaCCUGGCgCUC-CGCaUGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.