Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10920 | 3' | -57.5 | NC_002794.1 | + | 73543 | 0.67 | 0.854452 |
Target: 5'- cCGUCGccGugCGCGuGGCGUugGc- -3' miRNA: 3'- aGCAGCacCugGCGCuCCGCAugCuu -5' |
|||||||
10920 | 3' | -57.5 | NC_002794.1 | + | 130087 | 0.67 | 0.876272 |
Target: 5'- cCGUgGUGgGGCCGagcggaucacaCGAGGCGUugACGAc -3' miRNA: 3'- aGCAgCAC-CUGGC-----------GCUCCGCA--UGCUu -5' |
|||||||
10920 | 3' | -57.5 | NC_002794.1 | + | 52370 | 0.67 | 0.876272 |
Target: 5'- aUGUCGcUGG-CCGCGGGGCugcagAUGAGg -3' miRNA: 3'- aGCAGC-ACCuGGCGCUCCGca---UGCUU- -5' |
|||||||
10920 | 3' | -57.5 | NC_002794.1 | + | 181093 | 0.66 | 0.883141 |
Target: 5'- cCGUCGaGG-CCGCuGAGGCcgGCGAGg -3' miRNA: 3'- aGCAGCaCCuGGCG-CUCCGcaUGCUU- -5' |
|||||||
10920 | 3' | -57.5 | NC_002794.1 | + | 5504 | 0.66 | 0.883141 |
Target: 5'- -gGUCGUcGGCCGCGcGGCGcaGCGGGu -3' miRNA: 3'- agCAGCAcCUGGCGCuCCGCa-UGCUU- -5' |
|||||||
10920 | 3' | -57.5 | NC_002794.1 | + | 17441 | 0.66 | 0.889802 |
Target: 5'- gUGUCGcacGGACCGCGcgacGGGCGgugACGc- -3' miRNA: 3'- aGCAGCa--CCUGGCGC----UCCGCa--UGCuu -5' |
|||||||
10920 | 3' | -57.5 | NC_002794.1 | + | 99955 | 0.66 | 0.889802 |
Target: 5'- aCGaCGUGGugCGgGAGGUGcACGu- -3' miRNA: 3'- aGCaGCACCugGCgCUCCGCaUGCuu -5' |
|||||||
10920 | 3' | -57.5 | NC_002794.1 | + | 183154 | 0.66 | 0.89625 |
Target: 5'- gUCGgcCGUGGGCUGCGcguuccgcGGCG-ACGAGg -3' miRNA: 3'- -AGCa-GCACCUGGCGCu-------CCGCaUGCUU- -5' |
|||||||
10920 | 3' | -57.5 | NC_002794.1 | + | 62736 | 0.66 | 0.902481 |
Target: 5'- aUCGUUGcUGcGACgGCGAGagauCGUGCGAGa -3' miRNA: 3'- -AGCAGC-AC-CUGgCGCUCc---GCAUGCUU- -5' |
|||||||
10920 | 3' | -57.5 | NC_002794.1 | + | 100823 | 0.66 | 0.914284 |
Target: 5'- cUCGcCgGUGGcggcGCC-CGAGGCGUACGu- -3' miRNA: 3'- -AGCaG-CACC----UGGcGCUCCGCAUGCuu -5' |
|||||||
10920 | 3' | -57.5 | NC_002794.1 | + | 129939 | 0.66 | 0.914284 |
Target: 5'- gUCGUCGccGGCgGCGGuGGCGUcgGCGGc -3' miRNA: 3'- -AGCAGCacCUGgCGCU-CCGCA--UGCUu -5' |
|||||||
10920 | 3' | -57.5 | NC_002794.1 | + | 146459 | 0.66 | 0.914284 |
Target: 5'- cCGUCGgccacgGcGGCCGCGGcGGCG-GCGGc -3' miRNA: 3'- aGCAGCa-----C-CUGGCGCU-CCGCaUGCUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home