miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10920 5' -60.2 NC_002794.1 + 141868 0.66 0.803588
Target:  5'- --cGCGCCagcgUCUCCAGCagcucccgcagcacGGCCgccuucUUGGGc -3'
miRNA:   3'- gaaCGCGG----AGAGGUCG--------------CCGGa-----GACCC- -5'
10920 5' -60.2 NC_002794.1 + 52284 0.66 0.797589
Target:  5'- --cGCGCCgUCcUCGGCGGCgCUgUGGu -3'
miRNA:   3'- gaaCGCGG-AGaGGUCGCCG-GAgACCc -5'
10920 5' -60.2 NC_002794.1 + 195148 0.66 0.780089
Target:  5'- uUUGgGCCUCUCC-GCGaCCcCgGGGg -3'
miRNA:   3'- gAACgCGGAGAGGuCGCcGGaGaCCC- -5'
10920 5' -60.2 NC_002794.1 + 183179 0.66 0.770252
Target:  5'- --cGCGCUUCUCuCAGCgccuguucaugucGGCCg-UGGGc -3'
miRNA:   3'- gaaCGCGGAGAG-GUCG-------------CCGGagACCC- -5'
10920 5' -60.2 NC_002794.1 + 104906 0.66 0.765735
Target:  5'- -gUGCGCCgaggcccgggcccgCUUCGGCguGGCCUCguaccGGGc -3'
miRNA:   3'- gaACGCGGa-------------GAGGUCG--CCGGAGa----CCC- -5'
10920 5' -60.2 NC_002794.1 + 39294 0.66 0.762101
Target:  5'- --cGCGCCUgUCUgagAGCggagauGGCCgacCUGGGg -3'
miRNA:   3'- gaaCGCGGAgAGG---UCG------CCGGa--GACCC- -5'
10920 5' -60.2 NC_002794.1 + 147909 0.67 0.752945
Target:  5'- --cGCGCgUC-CCGGC-GCCggCUGGGc -3'
miRNA:   3'- gaaCGCGgAGaGGUCGcCGGa-GACCC- -5'
10920 5' -60.2 NC_002794.1 + 173365 0.67 0.734348
Target:  5'- --aGCGCUaC-CCAGCGaGCCgUUGGGg -3'
miRNA:   3'- gaaCGCGGaGaGGUCGC-CGGaGACCC- -5'
10920 5' -60.2 NC_002794.1 + 154476 0.67 0.734348
Target:  5'- --gGCGCCUcCUUCGGCGGCCcCg--- -3'
miRNA:   3'- gaaCGCGGA-GAGGUCGCCGGaGaccc -5'
10920 5' -60.2 NC_002794.1 + 58210 0.67 0.734348
Target:  5'- --gGCGCCgggcCUCCGGCG-CCgCUGGu -3'
miRNA:   3'- gaaCGCGGa---GAGGUCGCcGGaGACCc -5'
10920 5' -60.2 NC_002794.1 + 162334 0.67 0.715424
Target:  5'- ----aGCCUCUCCGGCcuGGCCacccagCUGGu -3'
miRNA:   3'- gaacgCGGAGAGGUCG--CCGGa-----GACCc -5'
10920 5' -60.2 NC_002794.1 + 102766 0.68 0.68657
Target:  5'- -cUGCgGCCUCUCCuGCcuGGaCUUCUGGc -3'
miRNA:   3'- gaACG-CGGAGAGGuCG--CC-GGAGACCc -5'
10920 5' -60.2 NC_002794.1 + 130732 0.68 0.667113
Target:  5'- --cGCGCCUgUCCgAGCuccucGGCgaCUGGGu -3'
miRNA:   3'- gaaCGCGGAgAGG-UCG-----CCGgaGACCC- -5'
10920 5' -60.2 NC_002794.1 + 29562 0.68 0.667113
Target:  5'- --aGCGUCUCUCCAGa-GCCUCUu-- -3'
miRNA:   3'- gaaCGCGGAGAGGUCgcCGGAGAccc -5'
10920 5' -60.2 NC_002794.1 + 148531 0.68 0.667113
Target:  5'- --gGUGCCcggCUCCcgcggcGGCGGCCUCcGGa -3'
miRNA:   3'- gaaCGCGGa--GAGG------UCGCCGGAGaCCc -5'
10920 5' -60.2 NC_002794.1 + 154653 0.68 0.657342
Target:  5'- --gGCGCUgCUgCCAcCGGCCUCcGGGg -3'
miRNA:   3'- gaaCGCGGaGA-GGUcGCCGGAGaCCC- -5'
10920 5' -60.2 NC_002794.1 + 183252 0.69 0.637752
Target:  5'- -cUGCGCCa--CCAGC-GCgUCUGGGg -3'
miRNA:   3'- gaACGCGGagaGGUCGcCGgAGACCC- -5'
10920 5' -60.2 NC_002794.1 + 13595 0.69 0.608353
Target:  5'- --cGCGCCgagUCCcgAGCGGCCUCccaugacGGGg -3'
miRNA:   3'- gaaCGCGGag-AGG--UCGCCGGAGa------CCC- -5'
10920 5' -60.2 NC_002794.1 + 71729 0.7 0.531111
Target:  5'- --aGCGCgUCUCCggcgcccgggAGCGGUCUCcgcGGGg -3'
miRNA:   3'- gaaCGCGgAGAGG----------UCGCCGGAGa--CCC- -5'
10920 5' -60.2 NC_002794.1 + 65196 0.71 0.493787
Target:  5'- --cGCcgGCCgcgggCUCCGccGCGGCCUCgUGGGa -3'
miRNA:   3'- gaaCG--CGGa----GAGGU--CGCCGGAG-ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.