miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10921 3' -68 NC_002794.1 + 126922 0.66 0.46337
Target:  5'- cGCCc-GCGGGCCGC-GGCgCCGGcGCc -3'
miRNA:   3'- -UGGacCGCCCGGCGcCCGaGGCCcUG- -5'
10921 3' -68 NC_002794.1 + 6818 0.66 0.46337
Target:  5'- cGCCagcGGCGGGCUGCGcgucgcguacGGCgUCuCGGGcCg -3'
miRNA:   3'- -UGGa--CCGCCCGGCGC----------CCG-AG-GCCCuG- -5'
10921 3' -68 NC_002794.1 + 44279 0.66 0.46337
Target:  5'- cCCcGGCGGcgcgcgccgccGCCGCGGGC-CCGcGGu- -3'
miRNA:   3'- uGGaCCGCC-----------CGGCGCCCGaGGC-CCug -5'
10921 3' -68 NC_002794.1 + 107786 0.66 0.46337
Target:  5'- ---gGGCgGGGCCGCGGuuUgaaCGGGGCg -3'
miRNA:   3'- uggaCCG-CCCGGCGCCcgAg--GCCCUG- -5'
10921 3' -68 NC_002794.1 + 127103 0.66 0.46337
Target:  5'- -aCUGaGcCGGGCCGCcgGGGCgCC-GGACg -3'
miRNA:   3'- ugGAC-C-GCCCGGCG--CCCGaGGcCCUG- -5'
10921 3' -68 NC_002794.1 + 163247 0.66 0.462522
Target:  5'- gGCCgGGgauCGGGCCcgccgacgaagagGgGGGCgacgaCCGGGGCg -3'
miRNA:   3'- -UGGaCC---GCCCGG-------------CgCCCGa----GGCCCUG- -5'
10921 3' -68 NC_002794.1 + 87977 0.66 0.45493
Target:  5'- ---aGGCGGcGCgGCGGGUgcggcugCCGGGuCu -3'
miRNA:   3'- uggaCCGCC-CGgCGCCCGa------GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 17614 0.66 0.45493
Target:  5'- gACgaGGCcgucgaGGGaaGCGGGCUgaCCGGaGACg -3'
miRNA:   3'- -UGgaCCG------CCCggCGCCCGA--GGCC-CUG- -5'
10921 3' -68 NC_002794.1 + 54215 0.66 0.45493
Target:  5'- gGCC-GGCGuGGCCGCGGccgCCGGcGGg -3'
miRNA:   3'- -UGGaCCGC-CCGGCGCCcgaGGCC-CUg -5'
10921 3' -68 NC_002794.1 + 173985 0.66 0.45493
Target:  5'- cGCgaGGCcGGCCGCGGGgugUCCGcGGCc -3'
miRNA:   3'- -UGgaCCGcCCGGCGCCCg--AGGCcCUG- -5'
10921 3' -68 NC_002794.1 + 146844 0.66 0.45493
Target:  5'- cGCCgcGGC-GGCCGCGGcGUcgUCCGGcGCg -3'
miRNA:   3'- -UGGa-CCGcCCGGCGCC-CG--AGGCCcUG- -5'
10921 3' -68 NC_002794.1 + 90417 0.66 0.446574
Target:  5'- cGCC-GGCGGcGCCGuCGuucugcccGUUCUGGGACg -3'
miRNA:   3'- -UGGaCCGCC-CGGC-GCc-------CGAGGCCCUG- -5'
10921 3' -68 NC_002794.1 + 175489 0.66 0.433384
Target:  5'- cACCUGcgccggaucgucgacGCGGuGCgGCGGGa-CCGGGAg -3'
miRNA:   3'- -UGGAC---------------CGCC-CGgCGCCCgaGGCCCUg -5'
10921 3' -68 NC_002794.1 + 52527 0.66 0.430122
Target:  5'- cGCgUGcuCGGGCaGCGGGCUCgGGcGAUa -3'
miRNA:   3'- -UGgACc-GCCCGgCGCCCGAGgCC-CUG- -5'
10921 3' -68 NC_002794.1 + 185383 0.66 0.427686
Target:  5'- cACCUGGCgacGccgaagcgcagucuGGCCGgGGGCUCCGaGcGAa -3'
miRNA:   3'- -UGGACCG---C--------------CCGGCgCCCGAGGC-C-CUg -5'
10921 3' -68 NC_002794.1 + 2802 0.66 0.422031
Target:  5'- cGCCc-GCaccGGCUGCGGGCcgUCgCGGGACa -3'
miRNA:   3'- -UGGacCGc--CCGGCGCCCG--AG-GCCCUG- -5'
10921 3' -68 NC_002794.1 + 154562 0.66 0.422031
Target:  5'- uCCgacGCGGGCCGCgugGGGuCUCCGaGGuCu -3'
miRNA:   3'- uGGac-CGCCCGGCG---CCC-GAGGC-CCuG- -5'
10921 3' -68 NC_002794.1 + 48805 0.66 0.414032
Target:  5'- gGCCggucuaaGGaCGGaGCCGCGGGCgcCCGguccaaGGACg -3'
miRNA:   3'- -UGGa------CC-GCC-CGGCGCCCGa-GGC------CCUG- -5'
10921 3' -68 NC_002794.1 + 177916 0.66 0.414032
Target:  5'- gACCUGGCGGccacCCGCGacucGC-CCGGGcCg -3'
miRNA:   3'- -UGGACCGCCc---GGCGCc---CGaGGCCCuG- -5'
10921 3' -68 NC_002794.1 + 72592 0.67 0.406128
Target:  5'- -gCUGGUccGGGCCGCGGuCgUCgCGGGAg -3'
miRNA:   3'- ugGACCG--CCCGGCGCCcG-AG-GCCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.