Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10921 | 3' | -68 | NC_002794.1 | + | 80019 | 0.78 | 0.07467 |
Target: 5'- gGCCcGGCGGGCU-CGGGC-CUGGGACg -3' miRNA: 3'- -UGGaCCGCCCGGcGCCCGaGGCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 101852 | 0.78 | 0.066069 |
Target: 5'- cGCCggcGGCGGGCCgGCGGGUUCCGccggcGGGCc -3' miRNA: 3'- -UGGa--CCGCCCGG-CGCCCGAGGC-----CCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 14224 | 0.77 | 0.088533 |
Target: 5'- ---gGGCGGaGCC-CGGGCUCCGGGAa -3' miRNA: 3'- uggaCCGCC-CGGcGCCCGAGGCCCUg -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 70117 | 0.75 | 0.112631 |
Target: 5'- ---aGGCGGGCCGCGGGaCggcggCCGGcGGCu -3' miRNA: 3'- uggaCCGCCCGGCGCCC-Ga----GGCC-CUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 56876 | 0.74 | 0.133018 |
Target: 5'- gGCCUGGCGGGCCuGCGcgaaGGCUuuGcGGCu -3' miRNA: 3'- -UGGACCGCCCGG-CGC----CCGAggCcCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 58218 | 0.74 | 0.136194 |
Target: 5'- uCCUGGCGGGCgC-CGGGCcUCCGGcGCc -3' miRNA: 3'- uGGACCGCCCG-GcGCCCG-AGGCCcUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 96323 | 0.73 | 0.151014 |
Target: 5'- uAUCUGuGCGGGCCGCGGaaaccgcgcgcgccCUCCGcGGGCg -3' miRNA: 3'- -UGGAC-CGCCCGGCGCCc-------------GAGGC-CCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 118205 | 0.73 | 0.149608 |
Target: 5'- cACCUGuGCGGcCCGCGGGuCUgCGGGGu -3' miRNA: 3'- -UGGAC-CGCCcGGCGCCC-GAgGCCCUg -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 79937 | 0.72 | 0.199106 |
Target: 5'- gACUUGGCGcGGCgGCGGGCcggCCcgccgcgugucgccgGGGACc -3' miRNA: 3'- -UGGACCGC-CCGgCGCCCGa--GG---------------CCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 161019 | 0.71 | 0.205052 |
Target: 5'- cGCCgGaGCGGgcgucggagcgggcGCCGCGGGCgCCGcGGACg -3' miRNA: 3'- -UGGaC-CGCC--------------CGGCGCCCGaGGC-CCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 54439 | 0.71 | 0.210675 |
Target: 5'- gACCUcgggGGCGGcgggggcGCCGgGGGCgCCGGGAg -3' miRNA: 3'- -UGGA----CCGCC-------CGGCgCCCGaGGCCCUg -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 195829 | 0.71 | 0.22582 |
Target: 5'- aACgaGGCc-GCCGCGGGCUCUcGGACg -3' miRNA: 3'- -UGgaCCGccCGGCGCCCGAGGcCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 100099 | 0.71 | 0.206445 |
Target: 5'- cGCggGGCGgcGGCCGCGacGGCggCCGGGGCg -3' miRNA: 3'- -UGgaCCGC--CCGGCGC--CCGa-GGCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 79046 | 0.7 | 0.269187 |
Target: 5'- cGCCguaGcGCGGGUCGCucuGGUcCCGGGACg -3' miRNA: 3'- -UGGa--C-CGCCCGGCGc--CCGaGGCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 104783 | 0.7 | 0.236074 |
Target: 5'- cGCCgUGGUGGGCUaCGGGCUCaaGGAg -3' miRNA: 3'- -UGG-ACCGCCCGGcGCCCGAGgcCCUg -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 181277 | 0.7 | 0.269187 |
Target: 5'- gACCgaaGCGGGCCGUGGcgaGCgcgCCGGGcACc -3' miRNA: 3'- -UGGac-CGCCCGGCGCC---CGa--GGCCC-UG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 140545 | 0.7 | 0.236074 |
Target: 5'- ---cGGCGGG-CGCGGGCggcuUCCGaGGACc -3' miRNA: 3'- uggaCCGCCCgGCGCCCG----AGGC-CCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 194665 | 0.7 | 0.235552 |
Target: 5'- cACC-GGCcauauaaGGGCCGaucgGGGCcCCGGGGCg -3' miRNA: 3'- -UGGaCCG-------CCCGGCg---CCCGaGGCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 96605 | 0.7 | 0.269187 |
Target: 5'- cGCCgcGGagGGGCuCGgGGGCUCCGGcGCg -3' miRNA: 3'- -UGGa-CCg-CCCG-GCgCCCGAGGCCcUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 11400 | 0.69 | 0.281029 |
Target: 5'- uGCCgcccGCGGGCCGCGcgaacGGCgCgCGGGGCc -3' miRNA: 3'- -UGGac--CGCCCGGCGC-----CCGaG-GCCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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