Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10921 | 3' | -68 | NC_002794.1 | + | 163277 | 0.69 | 0.275057 |
Target: 5'- ---cGGCGGuGCCG-GGGCcggggCCGGGGCc -3' miRNA: 3'- uggaCCGCC-CGGCgCCCGa----GGCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 108937 | 0.69 | 0.299561 |
Target: 5'- cGCCcgUGGCGGGCaggcgggGCGGGaUCCGGcGAg -3' miRNA: 3'- -UGG--ACCGCCCGg------CGCCCgAGGCC-CUg -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 59741 | 0.69 | 0.275057 |
Target: 5'- cACCUGGCGGGCgaaGUcgaagaggaGGGCgaggaCgGGGGCg -3' miRNA: 3'- -UGGACCGCCCGg--CG---------CCCGa----GgCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 11400 | 0.69 | 0.281029 |
Target: 5'- uGCCgcccGCGGGCCGCGcgaacGGCgCgCGGGGCc -3' miRNA: 3'- -UGGac--CGCCCGGCGC-----CCGaG-GCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 87478 | 0.69 | 0.281029 |
Target: 5'- cGCCgGaGCGGGgaGCGgaGGCUCCGGcGGCg -3' miRNA: 3'- -UGGaC-CGCCCggCGC--CCGAGGCC-CUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 103559 | 0.69 | 0.29328 |
Target: 5'- gACgaGGCGGGgcugggCGCGGGCggCgGGGGCc -3' miRNA: 3'- -UGgaCCGCCCg-----GCGCCCGa-GgCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 156848 | 0.68 | 0.315057 |
Target: 5'- uACCUGGUGuGCUG-GGGCaagaucuacuuucgCCGGGACg -3' miRNA: 3'- -UGGACCGCcCGGCgCCCGa-------------GGCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 70202 | 0.68 | 0.346428 |
Target: 5'- uGCCUcGGCGcGCUGaaCGGGCUCUGGcuGACg -3' miRNA: 3'- -UGGA-CCGCcCGGC--GCCCGAGGCC--CUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 177881 | 0.68 | 0.319024 |
Target: 5'- aGCCUGGCGcccacGGCCGCcGGCgaguacuaCGaGGACg -3' miRNA: 3'- -UGGACCGC-----CCGGCGcCCGag------GC-CCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 10070 | 0.68 | 0.353537 |
Target: 5'- gGCCgGcGCGGGgacccacaUCGcCGGGauCUCCGGGACg -3' miRNA: 3'- -UGGaC-CGCCC--------GGC-GCCC--GAGGCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 46582 | 0.68 | 0.339421 |
Target: 5'- cGCC-GGCGGcGCgGCGGcucGCUCaCGGGGg -3' miRNA: 3'- -UGGaCCGCC-CGgCGCC---CGAG-GCCCUg -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 158594 | 0.68 | 0.339421 |
Target: 5'- uCCgucGGCGGGCgCGCGGGCg-CGGcGuACa -3' miRNA: 3'- uGGa--CCGCCCG-GCGCCCGagGCC-C-UG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 84758 | 0.67 | 0.406128 |
Target: 5'- gGCCcGGCGGGaCCGUGgccgucgacGGCgCCGGcGGCc -3' miRNA: 3'- -UGGaCCGCCC-GGCGC---------CCGaGGCC-CUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 160883 | 0.67 | 0.37847 |
Target: 5'- cCCUGGCcacgaaacugcgccGGCUGCGGGC-CCGGcACu -3' miRNA: 3'- uGGACCGc-------------CCGGCGCCCGaGGCCcUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 77594 | 0.67 | 0.390606 |
Target: 5'- gGCCggGGCGGcGgCGCcGGCgUCgGGGACc -3' miRNA: 3'- -UGGa-CCGCC-CgGCGcCCG-AGgCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 157403 | 0.67 | 0.382991 |
Target: 5'- aGCC-GGCGcGGCCGCGGcGCgCCcuuuauGGGCg -3' miRNA: 3'- -UGGaCCGC-CCGGCGCC-CGaGGc-----CCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 101376 | 0.67 | 0.375476 |
Target: 5'- ---cGGCGgacgcGGCCGCGGGCcguggCgGGGAUg -3' miRNA: 3'- uggaCCGC-----CCGGCGCCCGa----GgCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 65928 | 0.67 | 0.375476 |
Target: 5'- gGCCgUGGCGacGGCgGCGgcggcGGCUCUGGaGACc -3' miRNA: 3'- -UGG-ACCGC--CCGgCGC-----CCGAGGCC-CUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 105403 | 0.67 | 0.382991 |
Target: 5'- aGCUUuucGGCGaGGCCGCGcGCggCGGGGCc -3' miRNA: 3'- -UGGA---CCGC-CCGGCGCcCGagGCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 183571 | 0.67 | 0.382991 |
Target: 5'- cGCCUGGguguccgaaaCGGGcCCGCGGGacucCUCCGcGGuCc -3' miRNA: 3'- -UGGACC----------GCCC-GGCGCCC----GAGGC-CCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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