miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10921 3' -68 NC_002794.1 + 101852 0.78 0.066069
Target:  5'- cGCCggcGGCGGGCCgGCGGGUUCCGccggcGGGCc -3'
miRNA:   3'- -UGGa--CCGCCCGG-CGCCCGAGGC-----CCUG- -5'
10921 3' -68 NC_002794.1 + 80019 0.78 0.07467
Target:  5'- gGCCcGGCGGGCU-CGGGC-CUGGGACg -3'
miRNA:   3'- -UGGaCCGCCCGGcGCCCGaGGCCCUG- -5'
10921 3' -68 NC_002794.1 + 14224 0.77 0.088533
Target:  5'- ---gGGCGGaGCC-CGGGCUCCGGGAa -3'
miRNA:   3'- uggaCCGCC-CGGcGCCCGAGGCCCUg -5'
10921 3' -68 NC_002794.1 + 70117 0.75 0.112631
Target:  5'- ---aGGCGGGCCGCGGGaCggcggCCGGcGGCu -3'
miRNA:   3'- uggaCCGCCCGGCGCCC-Ga----GGCC-CUG- -5'
10921 3' -68 NC_002794.1 + 56876 0.74 0.133018
Target:  5'- gGCCUGGCGGGCCuGCGcgaaGGCUuuGcGGCu -3'
miRNA:   3'- -UGGACCGCCCGG-CGC----CCGAggCcCUG- -5'
10921 3' -68 NC_002794.1 + 58218 0.74 0.136194
Target:  5'- uCCUGGCGGGCgC-CGGGCcUCCGGcGCc -3'
miRNA:   3'- uGGACCGCCCG-GcGCCCG-AGGCCcUG- -5'
10921 3' -68 NC_002794.1 + 118205 0.73 0.149608
Target:  5'- cACCUGuGCGGcCCGCGGGuCUgCGGGGu -3'
miRNA:   3'- -UGGAC-CGCCcGGCGCCC-GAgGCCCUg -5'
10921 3' -68 NC_002794.1 + 96323 0.73 0.151014
Target:  5'- uAUCUGuGCGGGCCGCGGaaaccgcgcgcgccCUCCGcGGGCg -3'
miRNA:   3'- -UGGAC-CGCCCGGCGCCc-------------GAGGC-CCUG- -5'
10921 3' -68 NC_002794.1 + 79937 0.72 0.199106
Target:  5'- gACUUGGCGcGGCgGCGGGCcggCCcgccgcgugucgccgGGGACc -3'
miRNA:   3'- -UGGACCGC-CCGgCGCCCGa--GG---------------CCCUG- -5'
10921 3' -68 NC_002794.1 + 161019 0.71 0.205052
Target:  5'- cGCCgGaGCGGgcgucggagcgggcGCCGCGGGCgCCGcGGACg -3'
miRNA:   3'- -UGGaC-CGCC--------------CGGCGCCCGaGGC-CCUG- -5'
10921 3' -68 NC_002794.1 + 100099 0.71 0.206445
Target:  5'- cGCggGGCGgcGGCCGCGacGGCggCCGGGGCg -3'
miRNA:   3'- -UGgaCCGC--CCGGCGC--CCGa-GGCCCUG- -5'
10921 3' -68 NC_002794.1 + 54439 0.71 0.210675
Target:  5'- gACCUcgggGGCGGcgggggcGCCGgGGGCgCCGGGAg -3'
miRNA:   3'- -UGGA----CCGCC-------CGGCgCCCGaGGCCCUg -5'
10921 3' -68 NC_002794.1 + 195829 0.71 0.22582
Target:  5'- aACgaGGCc-GCCGCGGGCUCUcGGACg -3'
miRNA:   3'- -UGgaCCGccCGGCGCCCGAGGcCCUG- -5'
10921 3' -68 NC_002794.1 + 194665 0.7 0.235552
Target:  5'- cACC-GGCcauauaaGGGCCGaucgGGGCcCCGGGGCg -3'
miRNA:   3'- -UGGaCCG-------CCCGGCg---CCCGaGGCCCUG- -5'
10921 3' -68 NC_002794.1 + 140545 0.7 0.236074
Target:  5'- ---cGGCGGG-CGCGGGCggcuUCCGaGGACc -3'
miRNA:   3'- uggaCCGCCCgGCGCCCG----AGGC-CCUG- -5'
10921 3' -68 NC_002794.1 + 104783 0.7 0.236074
Target:  5'- cGCCgUGGUGGGCUaCGGGCUCaaGGAg -3'
miRNA:   3'- -UGG-ACCGCCCGGcGCCCGAGgcCCUg -5'
10921 3' -68 NC_002794.1 + 79046 0.7 0.269187
Target:  5'- cGCCguaGcGCGGGUCGCucuGGUcCCGGGACg -3'
miRNA:   3'- -UGGa--C-CGCCCGGCGc--CCGaGGCCCUG- -5'
10921 3' -68 NC_002794.1 + 181277 0.7 0.269187
Target:  5'- gACCgaaGCGGGCCGUGGcgaGCgcgCCGGGcACc -3'
miRNA:   3'- -UGGac-CGCCCGGCGCC---CGa--GGCCC-UG- -5'
10921 3' -68 NC_002794.1 + 96605 0.7 0.269187
Target:  5'- cGCCgcGGagGGGCuCGgGGGCUCCGGcGCg -3'
miRNA:   3'- -UGGa-CCg-CCCG-GCgCCCGAGGCCcUG- -5'
10921 3' -68 NC_002794.1 + 59741 0.69 0.275057
Target:  5'- cACCUGGCGGGCgaaGUcgaagaggaGGGCgaggaCgGGGGCg -3'
miRNA:   3'- -UGGACCGCCCGg--CG---------CCCGa----GgCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.