miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10921 3' -68 NC_002794.1 + 59741 0.69 0.275057
Target:  5'- cACCUGGCGGGCgaaGUcgaagaggaGGGCgaggaCgGGGGCg -3'
miRNA:   3'- -UGGACCGCCCGg--CG---------CCCGa----GgCCCUG- -5'
10921 3' -68 NC_002794.1 + 87478 0.69 0.281029
Target:  5'- cGCCgGaGCGGGgaGCGgaGGCUCCGGcGGCg -3'
miRNA:   3'- -UGGaC-CGCCCggCGC--CCGAGGCC-CUG- -5'
10921 3' -68 NC_002794.1 + 11400 0.69 0.281029
Target:  5'- uGCCgcccGCGGGCCGCGcgaacGGCgCgCGGGGCc -3'
miRNA:   3'- -UGGac--CGCCCGGCGC-----CCGaG-GCCCUG- -5'
10921 3' -68 NC_002794.1 + 103559 0.69 0.29328
Target:  5'- gACgaGGCGGGgcugggCGCGGGCggCgGGGGCc -3'
miRNA:   3'- -UGgaCCGCCCg-----GCGCCCGa-GgCCCUG- -5'
10921 3' -68 NC_002794.1 + 65199 0.69 0.29328
Target:  5'- cGCC--GCcGGCCGCGGGCUCCGccGCg -3'
miRNA:   3'- -UGGacCGcCCGGCGCCCGAGGCccUG- -5'
10921 3' -68 NC_002794.1 + 108937 0.69 0.299561
Target:  5'- cGCCcgUGGCGGGCaggcgggGCGGGaUCCGGcGAg -3'
miRNA:   3'- -UGG--ACCGCCCGg------CGCCCgAGGCC-CUg -5'
10921 3' -68 NC_002794.1 + 156848 0.68 0.315057
Target:  5'- uACCUGGUGuGCUG-GGGCaagaucuacuuucgCCGGGACg -3'
miRNA:   3'- -UGGACCGCcCGGCgCCCGa-------------GGCCCUG- -5'
10921 3' -68 NC_002794.1 + 177881 0.68 0.319024
Target:  5'- aGCCUGGCGcccacGGCCGCcGGCgaguacuaCGaGGACg -3'
miRNA:   3'- -UGGACCGC-----CCGGCGcCCGag------GC-CCUG- -5'
10921 3' -68 NC_002794.1 + 158594 0.68 0.339421
Target:  5'- uCCgucGGCGGGCgCGCGGGCg-CGGcGuACa -3'
miRNA:   3'- uGGa--CCGCCCG-GCGCCCGagGCC-C-UG- -5'
10921 3' -68 NC_002794.1 + 46582 0.68 0.339421
Target:  5'- cGCC-GGCGGcGCgGCGGcucGCUCaCGGGGg -3'
miRNA:   3'- -UGGaCCGCC-CGgCGCC---CGAG-GCCCUg -5'
10921 3' -68 NC_002794.1 + 70202 0.68 0.346428
Target:  5'- uGCCUcGGCGcGCUGaaCGGGCUCUGGcuGACg -3'
miRNA:   3'- -UGGA-CCGCcCGGC--GCCCGAGGCC--CUG- -5'
10921 3' -68 NC_002794.1 + 10070 0.68 0.353537
Target:  5'- gGCCgGcGCGGGgacccacaUCGcCGGGauCUCCGGGACg -3'
miRNA:   3'- -UGGaC-CGCCC--------GGC-GCCC--GAGGCCCUG- -5'
10921 3' -68 NC_002794.1 + 108771 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 108603 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 108645 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 108729 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 108687 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 162992 0.67 0.368062
Target:  5'- aGCC-GGCGGGCgGCGgcGGCggCGGcGGCa -3'
miRNA:   3'- -UGGaCCGCCCGgCGC--CCGagGCC-CUG- -5'
10921 3' -68 NC_002794.1 + 14323 0.67 0.368062
Target:  5'- cGCCgccGGCGGGCCgGCGcucucGGUcgCCGGGcCa -3'
miRNA:   3'- -UGGa--CCGCCCGG-CGC-----CCGa-GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 101376 0.67 0.375476
Target:  5'- ---cGGCGgacgcGGCCGCGGGCcguggCgGGGAUg -3'
miRNA:   3'- uggaCCGC-----CCGGCGCCCGa----GgCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.