miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10921 3' -68 NC_002794.1 + 65928 0.67 0.375476
Target:  5'- gGCCgUGGCGacGGCgGCGgcggcGGCUCUGGaGACc -3'
miRNA:   3'- -UGG-ACCGC--CCGgCGC-----CCGAGGCC-CUG- -5'
10921 3' -68 NC_002794.1 + 101376 0.67 0.375476
Target:  5'- ---cGGCGgacgcGGCCGCGGGCcguggCgGGGAUg -3'
miRNA:   3'- uggaCCGC-----CCGGCGCCCGa----GgCCCUG- -5'
10921 3' -68 NC_002794.1 + 160883 0.67 0.37847
Target:  5'- cCCUGGCcacgaaacugcgccGGCUGCGGGC-CCGGcACu -3'
miRNA:   3'- uGGACCGc-------------CCGGCGCCCGaGGCCcUG- -5'
10921 3' -68 NC_002794.1 + 105403 0.67 0.382991
Target:  5'- aGCUUuucGGCGaGGCCGCGcGCggCGGGGCc -3'
miRNA:   3'- -UGGA---CCGC-CCGGCGCcCGagGCCCUG- -5'
10921 3' -68 NC_002794.1 + 157403 0.67 0.382991
Target:  5'- aGCC-GGCGcGGCCGCGGcGCgCCcuuuauGGGCg -3'
miRNA:   3'- -UGGaCCGC-CCGGCGCC-CGaGGc-----CCUG- -5'
10921 3' -68 NC_002794.1 + 183571 0.67 0.382991
Target:  5'- cGCCUGGguguccgaaaCGGGcCCGCGGGacucCUCCGcGGuCc -3'
miRNA:   3'- -UGGACC----------GCCC-GGCGCCC----GAGGC-CCuG- -5'
10921 3' -68 NC_002794.1 + 77594 0.67 0.390606
Target:  5'- gGCCggGGCGGcGgCGCcGGCgUCgGGGACc -3'
miRNA:   3'- -UGGa-CCGCC-CgGCGcCCG-AGgCCCUG- -5'
10921 3' -68 NC_002794.1 + 84107 0.67 0.398318
Target:  5'- -gCUGGC--GCCGCGcGGCgccgUCGGGGCg -3'
miRNA:   3'- ugGACCGccCGGCGC-CCGa---GGCCCUG- -5'
10921 3' -68 NC_002794.1 + 84758 0.67 0.406128
Target:  5'- gGCCcGGCGGGaCCGUGgccgucgacGGCgCCGGcGGCc -3'
miRNA:   3'- -UGGaCCGCCC-GGCGC---------CCGaGGCC-CUG- -5'
10921 3' -68 NC_002794.1 + 189547 0.67 0.406128
Target:  5'- cCCUGGCcacucuGGauCUGUGGGC-CCGGGAUa -3'
miRNA:   3'- uGGACCGc-----CC--GGCGCCCGaGGCCCUG- -5'
10921 3' -68 NC_002794.1 + 72592 0.67 0.406128
Target:  5'- -gCUGGUccGGGCCGCGGuCgUCgCGGGAg -3'
miRNA:   3'- ugGACCG--CCCGGCGCCcG-AG-GCCCUg -5'
10921 3' -68 NC_002794.1 + 48805 0.66 0.414032
Target:  5'- gGCCggucuaaGGaCGGaGCCGCGGGCgcCCGguccaaGGACg -3'
miRNA:   3'- -UGGa------CC-GCC-CGGCGCCCGa-GGC------CCUG- -5'
10921 3' -68 NC_002794.1 + 177916 0.66 0.414032
Target:  5'- gACCUGGCGGccacCCGCGacucGC-CCGGGcCg -3'
miRNA:   3'- -UGGACCGCCc---GGCGCc---CGaGGCCCuG- -5'
10921 3' -68 NC_002794.1 + 154562 0.66 0.422031
Target:  5'- uCCgacGCGGGCCGCgugGGGuCUCCGaGGuCu -3'
miRNA:   3'- uGGac-CGCCCGGCG---CCC-GAGGC-CCuG- -5'
10921 3' -68 NC_002794.1 + 2802 0.66 0.422031
Target:  5'- cGCCc-GCaccGGCUGCGGGCcgUCgCGGGACa -3'
miRNA:   3'- -UGGacCGc--CCGGCGCCCG--AG-GCCCUG- -5'
10921 3' -68 NC_002794.1 + 185383 0.66 0.427686
Target:  5'- cACCUGGCgacGccgaagcgcagucuGGCCGgGGGCUCCGaGcGAa -3'
miRNA:   3'- -UGGACCG---C--------------CCGGCgCCCGAGGC-C-CUg -5'
10921 3' -68 NC_002794.1 + 52527 0.66 0.430122
Target:  5'- cGCgUGcuCGGGCaGCGGGCUCgGGcGAUa -3'
miRNA:   3'- -UGgACc-GCCCGgCGCCCGAGgCC-CUG- -5'
10921 3' -68 NC_002794.1 + 175489 0.66 0.433384
Target:  5'- cACCUGcgccggaucgucgacGCGGuGCgGCGGGa-CCGGGAg -3'
miRNA:   3'- -UGGAC---------------CGCC-CGgCGCCCgaGGCCCUg -5'
10921 3' -68 NC_002794.1 + 90417 0.66 0.446574
Target:  5'- cGCC-GGCGGcGCCGuCGuucugcccGUUCUGGGACg -3'
miRNA:   3'- -UGGaCCGCC-CGGC-GCc-------CGAGGCCCUG- -5'
10921 3' -68 NC_002794.1 + 87977 0.66 0.45493
Target:  5'- ---aGGCGGcGCgGCGGGUgcggcugCCGGGuCu -3'
miRNA:   3'- uggaCCGCC-CGgCGCCCGa------GGCCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.