Results 21 - 40 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10921 | 3' | -68 | NC_002794.1 | + | 84758 | 0.67 | 0.406128 |
Target: 5'- gGCCcGGCGGGaCCGUGgccgucgacGGCgCCGGcGGCc -3' miRNA: 3'- -UGGaCCGCCC-GGCGC---------CCGaGGCC-CUG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 189547 | 0.67 | 0.406128 |
Target: 5'- cCCUGGCcacucuGGauCUGUGGGC-CCGGGAUa -3' miRNA: 3'- uGGACCGc-----CC--GGCGCCCGaGGCCCUG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 84107 | 0.67 | 0.398318 |
Target: 5'- -gCUGGC--GCCGCGcGGCgccgUCGGGGCg -3' miRNA: 3'- ugGACCGccCGGCGC-CCGa---GGCCCUG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 77594 | 0.67 | 0.390606 |
Target: 5'- gGCCggGGCGGcGgCGCcGGCgUCgGGGACc -3' miRNA: 3'- -UGGa-CCGCC-CgGCGcCCG-AGgCCCUG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 105403 | 0.67 | 0.382991 |
Target: 5'- aGCUUuucGGCGaGGCCGCGcGCggCGGGGCc -3' miRNA: 3'- -UGGA---CCGC-CCGGCGCcCGagGCCCUG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 183571 | 0.67 | 0.382991 |
Target: 5'- cGCCUGGguguccgaaaCGGGcCCGCGGGacucCUCCGcGGuCc -3' miRNA: 3'- -UGGACC----------GCCC-GGCGCCC----GAGGC-CCuG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 157403 | 0.67 | 0.382991 |
Target: 5'- aGCC-GGCGcGGCCGCGGcGCgCCcuuuauGGGCg -3' miRNA: 3'- -UGGaCCGC-CCGGCGCC-CGaGGc-----CCUG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 160883 | 0.67 | 0.37847 |
Target: 5'- cCCUGGCcacgaaacugcgccGGCUGCGGGC-CCGGcACu -3' miRNA: 3'- uGGACCGc-------------CCGGCGCCCGaGGCCcUG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 65928 | 0.67 | 0.375476 |
Target: 5'- gGCCgUGGCGacGGCgGCGgcggcGGCUCUGGaGACc -3' miRNA: 3'- -UGG-ACCGC--CCGgCGC-----CCGAGGCC-CUG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 101376 | 0.67 | 0.375476 |
Target: 5'- ---cGGCGgacgcGGCCGCGGGCcguggCgGGGAUg -3' miRNA: 3'- uggaCCGC-----CCGGCGCCCGa----GgCCCUG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 74474 | 0.67 | 0.375476 |
Target: 5'- cGCCgc-CGGGaCCGCGgccGGCgCCGGGACc -3' miRNA: 3'- -UGGaccGCCC-GGCGC---CCGaGGCCCUG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 162992 | 0.67 | 0.368062 |
Target: 5'- aGCC-GGCGGGCgGCGgcGGCggCGGcGGCa -3' miRNA: 3'- -UGGaCCGCCCGgCGC--CCGagGCC-CUG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 14323 | 0.67 | 0.368062 |
Target: 5'- cGCCgccGGCGGGCCgGCGcucucGGUcgCCGGGcCa -3' miRNA: 3'- -UGGa--CCGCCCGG-CGC-----CCGa-GGCCCuG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 108603 | 0.67 | 0.360748 |
Target: 5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3' miRNA: 3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 108645 | 0.67 | 0.360748 |
Target: 5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3' miRNA: 3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 108729 | 0.67 | 0.360748 |
Target: 5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3' miRNA: 3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 108687 | 0.67 | 0.360748 |
Target: 5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3' miRNA: 3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 108771 | 0.67 | 0.360748 |
Target: 5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3' miRNA: 3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 10070 | 0.68 | 0.353537 |
Target: 5'- gGCCgGcGCGGGgacccacaUCGcCGGGauCUCCGGGACg -3' miRNA: 3'- -UGGaC-CGCCC--------GGC-GCCC--GAGGCCCUG- -5' |
|||||||
10921 | 3' | -68 | NC_002794.1 | + | 70202 | 0.68 | 0.346428 |
Target: 5'- uGCCUcGGCGcGCUGaaCGGGCUCUGGcuGACg -3' miRNA: 3'- -UGGA-CCGCcCGGC--GCCCGAGGCC--CUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home