Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10921 | 3' | -68 | NC_002794.1 | + | 158594 | 0.68 | 0.339421 |
Target: 5'- uCCgucGGCGGGCgCGCGGGCg-CGGcGuACa -3' miRNA: 3'- uGGa--CCGCCCG-GCGCCCGagGCC-C-UG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 46582 | 0.68 | 0.339421 |
Target: 5'- cGCC-GGCGGcGCgGCGGcucGCUCaCGGGGg -3' miRNA: 3'- -UGGaCCGCC-CGgCGCC---CGAG-GCCCUg -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 177881 | 0.68 | 0.319024 |
Target: 5'- aGCCUGGCGcccacGGCCGCcGGCgaguacuaCGaGGACg -3' miRNA: 3'- -UGGACCGC-----CCGGCGcCCGag------GC-CCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 156848 | 0.68 | 0.315057 |
Target: 5'- uACCUGGUGuGCUG-GGGCaagaucuacuuucgCCGGGACg -3' miRNA: 3'- -UGGACCGCcCGGCgCCCGa-------------GGCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 108937 | 0.69 | 0.299561 |
Target: 5'- cGCCcgUGGCGGGCaggcgggGCGGGaUCCGGcGAg -3' miRNA: 3'- -UGG--ACCGCCCGg------CGCCCgAGGCC-CUg -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 103559 | 0.69 | 0.29328 |
Target: 5'- gACgaGGCGGGgcugggCGCGGGCggCgGGGGCc -3' miRNA: 3'- -UGgaCCGCCCg-----GCGCCCGa-GgCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 65199 | 0.69 | 0.29328 |
Target: 5'- cGCC--GCcGGCCGCGGGCUCCGccGCg -3' miRNA: 3'- -UGGacCGcCCGGCGCCCGAGGCccUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 87478 | 0.69 | 0.281029 |
Target: 5'- cGCCgGaGCGGGgaGCGgaGGCUCCGGcGGCg -3' miRNA: 3'- -UGGaC-CGCCCggCGC--CCGAGGCC-CUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 11400 | 0.69 | 0.281029 |
Target: 5'- uGCCgcccGCGGGCCGCGcgaacGGCgCgCGGGGCc -3' miRNA: 3'- -UGGac--CGCCCGGCGC-----CCGaG-GCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 163277 | 0.69 | 0.275057 |
Target: 5'- ---cGGCGGuGCCG-GGGCcggggCCGGGGCc -3' miRNA: 3'- uggaCCGCC-CGGCgCCCGa----GGCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 59741 | 0.69 | 0.275057 |
Target: 5'- cACCUGGCGGGCgaaGUcgaagaggaGGGCgaggaCgGGGGCg -3' miRNA: 3'- -UGGACCGCCCGg--CG---------CCCGa----GgCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 181277 | 0.7 | 0.269187 |
Target: 5'- gACCgaaGCGGGCCGUGGcgaGCgcgCCGGGcACc -3' miRNA: 3'- -UGGac-CGCCCGGCGCC---CGa--GGCCC-UG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 79046 | 0.7 | 0.269187 |
Target: 5'- cGCCguaGcGCGGGUCGCucuGGUcCCGGGACg -3' miRNA: 3'- -UGGa--C-CGCCCGGCGc--CCGaGGCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 96605 | 0.7 | 0.269187 |
Target: 5'- cGCCgcGGagGGGCuCGgGGGCUCCGGcGCg -3' miRNA: 3'- -UGGa-CCg-CCCG-GCgCCCGAGGCCcUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 140545 | 0.7 | 0.236074 |
Target: 5'- ---cGGCGGG-CGCGGGCggcuUCCGaGGACc -3' miRNA: 3'- uggaCCGCCCgGCGCCCG----AGGC-CCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 104783 | 0.7 | 0.236074 |
Target: 5'- cGCCgUGGUGGGCUaCGGGCUCaaGGAg -3' miRNA: 3'- -UGG-ACCGCCCGGcGCCCGAGgcCCUg -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 194665 | 0.7 | 0.235552 |
Target: 5'- cACC-GGCcauauaaGGGCCGaucgGGGCcCCGGGGCg -3' miRNA: 3'- -UGGaCCG-------CCCGGCg---CCCGaGGCCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 195829 | 0.71 | 0.22582 |
Target: 5'- aACgaGGCc-GCCGCGGGCUCUcGGACg -3' miRNA: 3'- -UGgaCCGccCGGCGCCCGAGGcCCUG- -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 54439 | 0.71 | 0.210675 |
Target: 5'- gACCUcgggGGCGGcgggggcGCCGgGGGCgCCGGGAg -3' miRNA: 3'- -UGGA----CCGCC-------CGGCgCCCGaGGCCCUg -5' |
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10921 | 3' | -68 | NC_002794.1 | + | 100099 | 0.71 | 0.206445 |
Target: 5'- cGCggGGCGgcGGCCGCGacGGCggCCGGGGCg -3' miRNA: 3'- -UGgaCCGC--CCGGCGC--CCGa-GGCCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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