miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10921 3' -68 NC_002794.1 + 2802 0.66 0.422031
Target:  5'- cGCCc-GCaccGGCUGCGGGCcgUCgCGGGACa -3'
miRNA:   3'- -UGGacCGc--CCGGCGCCCG--AG-GCCCUG- -5'
10921 3' -68 NC_002794.1 + 6818 0.66 0.46337
Target:  5'- cGCCagcGGCGGGCUGCGcgucgcguacGGCgUCuCGGGcCg -3'
miRNA:   3'- -UGGa--CCGCCCGGCGC----------CCG-AG-GCCCuG- -5'
10921 3' -68 NC_002794.1 + 10070 0.68 0.353537
Target:  5'- gGCCgGcGCGGGgacccacaUCGcCGGGauCUCCGGGACg -3'
miRNA:   3'- -UGGaC-CGCCC--------GGC-GCCC--GAGGCCCUG- -5'
10921 3' -68 NC_002794.1 + 11400 0.69 0.281029
Target:  5'- uGCCgcccGCGGGCCGCGcgaacGGCgCgCGGGGCc -3'
miRNA:   3'- -UGGac--CGCCCGGCGC-----CCGaG-GCCCUG- -5'
10921 3' -68 NC_002794.1 + 14224 0.77 0.088533
Target:  5'- ---gGGCGGaGCC-CGGGCUCCGGGAa -3'
miRNA:   3'- uggaCCGCC-CGGcGCCCGAGGCCCUg -5'
10921 3' -68 NC_002794.1 + 14323 0.67 0.368062
Target:  5'- cGCCgccGGCGGGCCgGCGcucucGGUcgCCGGGcCa -3'
miRNA:   3'- -UGGa--CCGCCCGG-CGC-----CCGa-GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 17614 0.66 0.45493
Target:  5'- gACgaGGCcgucgaGGGaaGCGGGCUgaCCGGaGACg -3'
miRNA:   3'- -UGgaCCG------CCCggCGCCCGA--GGCC-CUG- -5'
10921 3' -68 NC_002794.1 + 44279 0.66 0.46337
Target:  5'- cCCcGGCGGcgcgcgccgccGCCGCGGGC-CCGcGGu- -3'
miRNA:   3'- uGGaCCGCC-----------CGGCGCCCGaGGC-CCug -5'
10921 3' -68 NC_002794.1 + 46582 0.68 0.339421
Target:  5'- cGCC-GGCGGcGCgGCGGcucGCUCaCGGGGg -3'
miRNA:   3'- -UGGaCCGCC-CGgCGCC---CGAG-GCCCUg -5'
10921 3' -68 NC_002794.1 + 48805 0.66 0.414032
Target:  5'- gGCCggucuaaGGaCGGaGCCGCGGGCgcCCGguccaaGGACg -3'
miRNA:   3'- -UGGa------CC-GCC-CGGCGCCCGa-GGC------CCUG- -5'
10921 3' -68 NC_002794.1 + 52527 0.66 0.430122
Target:  5'- cGCgUGcuCGGGCaGCGGGCUCgGGcGAUa -3'
miRNA:   3'- -UGgACc-GCCCGgCGCCCGAGgCC-CUG- -5'
10921 3' -68 NC_002794.1 + 54215 0.66 0.45493
Target:  5'- gGCC-GGCGuGGCCGCGGccgCCGGcGGg -3'
miRNA:   3'- -UGGaCCGC-CCGGCGCCcgaGGCC-CUg -5'
10921 3' -68 NC_002794.1 + 54439 0.71 0.210675
Target:  5'- gACCUcgggGGCGGcgggggcGCCGgGGGCgCCGGGAg -3'
miRNA:   3'- -UGGA----CCGCC-------CGGCgCCCGaGGCCCUg -5'
10921 3' -68 NC_002794.1 + 56876 0.74 0.133018
Target:  5'- gGCCUGGCGGGCCuGCGcgaaGGCUuuGcGGCu -3'
miRNA:   3'- -UGGACCGCCCGG-CGC----CCGAggCcCUG- -5'
10921 3' -68 NC_002794.1 + 58218 0.74 0.136194
Target:  5'- uCCUGGCGGGCgC-CGGGCcUCCGGcGCc -3'
miRNA:   3'- uGGACCGCCCG-GcGCCCG-AGGCCcUG- -5'
10921 3' -68 NC_002794.1 + 59741 0.69 0.275057
Target:  5'- cACCUGGCGGGCgaaGUcgaagaggaGGGCgaggaCgGGGGCg -3'
miRNA:   3'- -UGGACCGCCCGg--CG---------CCCGa----GgCCCUG- -5'
10921 3' -68 NC_002794.1 + 65199 0.69 0.29328
Target:  5'- cGCC--GCcGGCCGCGGGCUCCGccGCg -3'
miRNA:   3'- -UGGacCGcCCGGCGCCCGAGGCccUG- -5'
10921 3' -68 NC_002794.1 + 65928 0.67 0.375476
Target:  5'- gGCCgUGGCGacGGCgGCGgcggcGGCUCUGGaGACc -3'
miRNA:   3'- -UGG-ACCGC--CCGgCGC-----CCGAGGCC-CUG- -5'
10921 3' -68 NC_002794.1 + 70117 0.75 0.112631
Target:  5'- ---aGGCGGGCCGCGGGaCggcggCCGGcGGCu -3'
miRNA:   3'- uggaCCGCCCGGCGCCC-Ga----GGCC-CUG- -5'
10921 3' -68 NC_002794.1 + 70202 0.68 0.346428
Target:  5'- uGCCUcGGCGcGCUGaaCGGGCUCUGGcuGACg -3'
miRNA:   3'- -UGGA-CCGCcCGGC--GCCCGAGGCC--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.