miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10921 3' -68 NC_002794.1 + 108603 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 108645 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 108687 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 108729 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 108771 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 108937 0.69 0.299561
Target:  5'- cGCCcgUGGCGGGCaggcgggGCGGGaUCCGGcGAg -3'
miRNA:   3'- -UGG--ACCGCCCGg------CGCCCgAGGCC-CUg -5'
10921 3' -68 NC_002794.1 + 118205 0.73 0.149608
Target:  5'- cACCUGuGCGGcCCGCGGGuCUgCGGGGu -3'
miRNA:   3'- -UGGAC-CGCCcGGCGCCC-GAgGCCCUg -5'
10921 3' -68 NC_002794.1 + 126922 0.66 0.46337
Target:  5'- cGCCc-GCGGGCCGC-GGCgCCGGcGCc -3'
miRNA:   3'- -UGGacCGCCCGGCGcCCGaGGCCcUG- -5'
10921 3' -68 NC_002794.1 + 127103 0.66 0.46337
Target:  5'- -aCUGaGcCGGGCCGCcgGGGCgCC-GGACg -3'
miRNA:   3'- ugGAC-C-GCCCGGCG--CCCGaGGcCCUG- -5'
10921 3' -68 NC_002794.1 + 140545 0.7 0.236074
Target:  5'- ---cGGCGGG-CGCGGGCggcuUCCGaGGACc -3'
miRNA:   3'- uggaCCGCCCgGCGCCCG----AGGC-CCUG- -5'
10921 3' -68 NC_002794.1 + 146844 0.66 0.45493
Target:  5'- cGCCgcGGC-GGCCGCGGcGUcgUCCGGcGCg -3'
miRNA:   3'- -UGGa-CCGcCCGGCGCC-CG--AGGCCcUG- -5'
10921 3' -68 NC_002794.1 + 154562 0.66 0.422031
Target:  5'- uCCgacGCGGGCCGCgugGGGuCUCCGaGGuCu -3'
miRNA:   3'- uGGac-CGCCCGGCG---CCC-GAGGC-CCuG- -5'
10921 3' -68 NC_002794.1 + 156848 0.68 0.315057
Target:  5'- uACCUGGUGuGCUG-GGGCaagaucuacuuucgCCGGGACg -3'
miRNA:   3'- -UGGACCGCcCGGCgCCCGa-------------GGCCCUG- -5'
10921 3' -68 NC_002794.1 + 157403 0.67 0.382991
Target:  5'- aGCC-GGCGcGGCCGCGGcGCgCCcuuuauGGGCg -3'
miRNA:   3'- -UGGaCCGC-CCGGCGCC-CGaGGc-----CCUG- -5'
10921 3' -68 NC_002794.1 + 158594 0.68 0.339421
Target:  5'- uCCgucGGCGGGCgCGCGGGCg-CGGcGuACa -3'
miRNA:   3'- uGGa--CCGCCCG-GCGCCCGagGCC-C-UG- -5'
10921 3' -68 NC_002794.1 + 160883 0.67 0.37847
Target:  5'- cCCUGGCcacgaaacugcgccGGCUGCGGGC-CCGGcACu -3'
miRNA:   3'- uGGACCGc-------------CCGGCGCCCGaGGCCcUG- -5'
10921 3' -68 NC_002794.1 + 161019 0.71 0.205052
Target:  5'- cGCCgGaGCGGgcgucggagcgggcGCCGCGGGCgCCGcGGACg -3'
miRNA:   3'- -UGGaC-CGCC--------------CGGCGCCCGaGGC-CCUG- -5'
10921 3' -68 NC_002794.1 + 162992 0.67 0.368062
Target:  5'- aGCC-GGCGGGCgGCGgcGGCggCGGcGGCa -3'
miRNA:   3'- -UGGaCCGCCCGgCGC--CCGagGCC-CUG- -5'
10921 3' -68 NC_002794.1 + 163247 0.66 0.462522
Target:  5'- gGCCgGGgauCGGGCCcgccgacgaagagGgGGGCgacgaCCGGGGCg -3'
miRNA:   3'- -UGGaCC---GCCCGG-------------CgCCCGa----GGCCCUG- -5'
10921 3' -68 NC_002794.1 + 163277 0.69 0.275057
Target:  5'- ---cGGCGGuGCCG-GGGCcggggCCGGGGCc -3'
miRNA:   3'- uggaCCGCC-CGGCgCCCGa----GGCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.