miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10921 3' -68 NC_002794.1 + 195829 0.71 0.22582
Target:  5'- aACgaGGCc-GCCGCGGGCUCUcGGACg -3'
miRNA:   3'- -UGgaCCGccCGGCGCCCGAGGcCCUG- -5'
10921 3' -68 NC_002794.1 + 194665 0.7 0.235552
Target:  5'- cACC-GGCcauauaaGGGCCGaucgGGGCcCCGGGGCg -3'
miRNA:   3'- -UGGaCCG-------CCCGGCg---CCCGaGGCCCUG- -5'
10921 3' -68 NC_002794.1 + 189547 0.67 0.406128
Target:  5'- cCCUGGCcacucuGGauCUGUGGGC-CCGGGAUa -3'
miRNA:   3'- uGGACCGc-----CC--GGCGCCCGaGGCCCUG- -5'
10921 3' -68 NC_002794.1 + 185383 0.66 0.427686
Target:  5'- cACCUGGCgacGccgaagcgcagucuGGCCGgGGGCUCCGaGcGAa -3'
miRNA:   3'- -UGGACCG---C--------------CCGGCgCCCGAGGC-C-CUg -5'
10921 3' -68 NC_002794.1 + 183571 0.67 0.382991
Target:  5'- cGCCUGGguguccgaaaCGGGcCCGCGGGacucCUCCGcGGuCc -3'
miRNA:   3'- -UGGACC----------GCCC-GGCGCCC----GAGGC-CCuG- -5'
10921 3' -68 NC_002794.1 + 181277 0.7 0.269187
Target:  5'- gACCgaaGCGGGCCGUGGcgaGCgcgCCGGGcACc -3'
miRNA:   3'- -UGGac-CGCCCGGCGCC---CGa--GGCCC-UG- -5'
10921 3' -68 NC_002794.1 + 177916 0.66 0.414032
Target:  5'- gACCUGGCGGccacCCGCGacucGC-CCGGGcCg -3'
miRNA:   3'- -UGGACCGCCc---GGCGCc---CGaGGCCCuG- -5'
10921 3' -68 NC_002794.1 + 177881 0.68 0.319024
Target:  5'- aGCCUGGCGcccacGGCCGCcGGCgaguacuaCGaGGACg -3'
miRNA:   3'- -UGGACCGC-----CCGGCGcCCGag------GC-CCUG- -5'
10921 3' -68 NC_002794.1 + 175489 0.66 0.433384
Target:  5'- cACCUGcgccggaucgucgacGCGGuGCgGCGGGa-CCGGGAg -3'
miRNA:   3'- -UGGAC---------------CGCC-CGgCGCCCgaGGCCCUg -5'
10921 3' -68 NC_002794.1 + 173985 0.66 0.45493
Target:  5'- cGCgaGGCcGGCCGCGGGgugUCCGcGGCc -3'
miRNA:   3'- -UGgaCCGcCCGGCGCCCg--AGGCcCUG- -5'
10921 3' -68 NC_002794.1 + 163277 0.69 0.275057
Target:  5'- ---cGGCGGuGCCG-GGGCcggggCCGGGGCc -3'
miRNA:   3'- uggaCCGCC-CGGCgCCCGa----GGCCCUG- -5'
10921 3' -68 NC_002794.1 + 163247 0.66 0.462522
Target:  5'- gGCCgGGgauCGGGCCcgccgacgaagagGgGGGCgacgaCCGGGGCg -3'
miRNA:   3'- -UGGaCC---GCCCGG-------------CgCCCGa----GGCCCUG- -5'
10921 3' -68 NC_002794.1 + 162992 0.67 0.368062
Target:  5'- aGCC-GGCGGGCgGCGgcGGCggCGGcGGCa -3'
miRNA:   3'- -UGGaCCGCCCGgCGC--CCGagGCC-CUG- -5'
10921 3' -68 NC_002794.1 + 161019 0.71 0.205052
Target:  5'- cGCCgGaGCGGgcgucggagcgggcGCCGCGGGCgCCGcGGACg -3'
miRNA:   3'- -UGGaC-CGCC--------------CGGCGCCCGaGGC-CCUG- -5'
10921 3' -68 NC_002794.1 + 160883 0.67 0.37847
Target:  5'- cCCUGGCcacgaaacugcgccGGCUGCGGGC-CCGGcACu -3'
miRNA:   3'- uGGACCGc-------------CCGGCGCCCGaGGCCcUG- -5'
10921 3' -68 NC_002794.1 + 158594 0.68 0.339421
Target:  5'- uCCgucGGCGGGCgCGCGGGCg-CGGcGuACa -3'
miRNA:   3'- uGGa--CCGCCCG-GCGCCCGagGCC-C-UG- -5'
10921 3' -68 NC_002794.1 + 157403 0.67 0.382991
Target:  5'- aGCC-GGCGcGGCCGCGGcGCgCCcuuuauGGGCg -3'
miRNA:   3'- -UGGaCCGC-CCGGCGCC-CGaGGc-----CCUG- -5'
10921 3' -68 NC_002794.1 + 156848 0.68 0.315057
Target:  5'- uACCUGGUGuGCUG-GGGCaagaucuacuuucgCCGGGACg -3'
miRNA:   3'- -UGGACCGCcCGGCgCCCGa-------------GGCCCUG- -5'
10921 3' -68 NC_002794.1 + 154562 0.66 0.422031
Target:  5'- uCCgacGCGGGCCGCgugGGGuCUCCGaGGuCu -3'
miRNA:   3'- uGGac-CGCCCGGCG---CCC-GAGGC-CCuG- -5'
10921 3' -68 NC_002794.1 + 146844 0.66 0.45493
Target:  5'- cGCCgcGGC-GGCCGCGGcGUcgUCCGGcGCg -3'
miRNA:   3'- -UGGa-CCGcCCGGCGCC-CG--AGGCCcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.