miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10921 3' -68 NC_002794.1 + 140545 0.7 0.236074
Target:  5'- ---cGGCGGG-CGCGGGCggcuUCCGaGGACc -3'
miRNA:   3'- uggaCCGCCCgGCGCCCG----AGGC-CCUG- -5'
10921 3' -68 NC_002794.1 + 127103 0.66 0.46337
Target:  5'- -aCUGaGcCGGGCCGCcgGGGCgCC-GGACg -3'
miRNA:   3'- ugGAC-C-GCCCGGCG--CCCGaGGcCCUG- -5'
10921 3' -68 NC_002794.1 + 126922 0.66 0.46337
Target:  5'- cGCCc-GCGGGCCGC-GGCgCCGGcGCc -3'
miRNA:   3'- -UGGacCGCCCGGCGcCCGaGGCCcUG- -5'
10921 3' -68 NC_002794.1 + 118205 0.73 0.149608
Target:  5'- cACCUGuGCGGcCCGCGGGuCUgCGGGGu -3'
miRNA:   3'- -UGGAC-CGCCcGGCGCCC-GAgGCCCUg -5'
10921 3' -68 NC_002794.1 + 108937 0.69 0.299561
Target:  5'- cGCCcgUGGCGGGCaggcgggGCGGGaUCCGGcGAg -3'
miRNA:   3'- -UGG--ACCGCCCGg------CGCCCgAGGCC-CUg -5'
10921 3' -68 NC_002794.1 + 108771 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 108729 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 108687 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 108645 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 108603 0.67 0.360748
Target:  5'- gGCCgGGCGGGUgGgGGuGCaggCCGGG-Cg -3'
miRNA:   3'- -UGGaCCGCCCGgCgCC-CGa--GGCCCuG- -5'
10921 3' -68 NC_002794.1 + 107786 0.66 0.46337
Target:  5'- ---gGGCgGGGCCGCGGuuUgaaCGGGGCg -3'
miRNA:   3'- uggaCCG-CCCGGCGCCcgAg--GCCCUG- -5'
10921 3' -68 NC_002794.1 + 105403 0.67 0.382991
Target:  5'- aGCUUuucGGCGaGGCCGCGcGCggCGGGGCc -3'
miRNA:   3'- -UGGA---CCGC-CCGGCGCcCGagGCCCUG- -5'
10921 3' -68 NC_002794.1 + 104783 0.7 0.236074
Target:  5'- cGCCgUGGUGGGCUaCGGGCUCaaGGAg -3'
miRNA:   3'- -UGG-ACCGCCCGGcGCCCGAGgcCCUg -5'
10921 3' -68 NC_002794.1 + 103559 0.69 0.29328
Target:  5'- gACgaGGCGGGgcugggCGCGGGCggCgGGGGCc -3'
miRNA:   3'- -UGgaCCGCCCg-----GCGCCCGa-GgCCCUG- -5'
10921 3' -68 NC_002794.1 + 101852 0.78 0.066069
Target:  5'- cGCCggcGGCGGGCCgGCGGGUUCCGccggcGGGCc -3'
miRNA:   3'- -UGGa--CCGCCCGG-CGCCCGAGGC-----CCUG- -5'
10921 3' -68 NC_002794.1 + 101376 0.67 0.375476
Target:  5'- ---cGGCGgacgcGGCCGCGGGCcguggCgGGGAUg -3'
miRNA:   3'- uggaCCGC-----CCGGCGCCCGa----GgCCCUG- -5'
10921 3' -68 NC_002794.1 + 100099 0.71 0.206445
Target:  5'- cGCggGGCGgcGGCCGCGacGGCggCCGGGGCg -3'
miRNA:   3'- -UGgaCCGC--CCGGCGC--CCGa-GGCCCUG- -5'
10921 3' -68 NC_002794.1 + 96605 0.7 0.269187
Target:  5'- cGCCgcGGagGGGCuCGgGGGCUCCGGcGCg -3'
miRNA:   3'- -UGGa-CCg-CCCG-GCgCCCGAGGCCcUG- -5'
10921 3' -68 NC_002794.1 + 96323 0.73 0.151014
Target:  5'- uAUCUGuGCGGGCCGCGGaaaccgcgcgcgccCUCCGcGGGCg -3'
miRNA:   3'- -UGGAC-CGCCCGGCGCCc-------------GAGGC-CCUG- -5'
10921 3' -68 NC_002794.1 + 90417 0.66 0.446574
Target:  5'- cGCC-GGCGGcGCCGuCGuucugcccGUUCUGGGACg -3'
miRNA:   3'- -UGGaCCGCC-CGGC-GCc-------CGAGGCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.