miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10921 5' -57.8 NC_002794.1 + 17442 0.66 0.886073
Target:  5'- -cGUGUC-GCACggaCCGCgcgacgggcggUGACGCCGUGu -3'
miRNA:   3'- caCAUAGcCGUG---GGCG-----------ACUGCGGCAU- -5'
10921 5' -57.8 NC_002794.1 + 100817 0.66 0.886073
Target:  5'- gGUGg--CGGCGCCCGa-GGCGUaCGUGg -3'
miRNA:   3'- -CACauaGCCGUGGGCgaCUGCG-GCAU- -5'
10921 5' -57.8 NC_002794.1 + 64299 0.66 0.879221
Target:  5'- cGUGgucggcgCGGCGCCCGUcuUGACgGCCu-- -3'
miRNA:   3'- -CACaua----GCCGUGGGCG--ACUG-CGGcau -5'
10921 5' -57.8 NC_002794.1 + 123393 0.66 0.879221
Target:  5'- -----cCGGC-CCCGCggcGGCGCCGa- -3'
miRNA:   3'- cacauaGCCGuGGGCGa--CUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 58456 0.66 0.864888
Target:  5'- cUGUc-CGGCGUCCGCgGACGCCGc- -3'
miRNA:   3'- cACAuaGCCGUGGGCGaCUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 115402 0.66 0.857417
Target:  5'- ---cGUCGGCgGCCCGCUGcccgucuuccGCGUCGa- -3'
miRNA:   3'- cacaUAGCCG-UGGGCGAC----------UGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 135220 0.66 0.849751
Target:  5'- -----cCGGCGCCgGC-GGCGCCGg- -3'
miRNA:   3'- cacauaGCCGUGGgCGaCUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 148335 0.66 0.849751
Target:  5'- -----aCGGCACCgGCUGcccuCGCCGa- -3'
miRNA:   3'- cacauaGCCGUGGgCGACu---GCGGCau -5'
10921 5' -57.8 NC_002794.1 + 128484 0.67 0.841895
Target:  5'- cGUGUcgaaagaacgcGUCGGCGCCaGCgucGGCGCCa-- -3'
miRNA:   3'- -CACA-----------UAGCCGUGGgCGa--CUGCGGcau -5'
10921 5' -57.8 NC_002794.1 + 80271 0.67 0.841895
Target:  5'- -cGUAgCGGCugcggucgACCCGCUcgcccGGCGCCGg- -3'
miRNA:   3'- caCAUaGCCG--------UGGGCGA-----CUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 70029 0.67 0.841895
Target:  5'- ----cUCGGCGCCCuGCUGcuGCGCUGc- -3'
miRNA:   3'- cacauAGCCGUGGG-CGAC--UGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 64585 0.67 0.841895
Target:  5'- -----cCGGCACcaCCGCcGGCGCCGUc -3'
miRNA:   3'- cacauaGCCGUG--GGCGaCUGCGGCAu -5'
10921 5' -57.8 NC_002794.1 + 72033 0.67 0.825641
Target:  5'- -aGgagCGGCGCCCGUcgauccgGAUGCCGg- -3'
miRNA:   3'- caCauaGCCGUGGGCGa------CUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 104615 0.67 0.825641
Target:  5'- ---cGUCGggcuGCGCUCGCgGACGCCGUu -3'
miRNA:   3'- cacaUAGC----CGUGGGCGaCUGCGGCAu -5'
10921 5' -57.8 NC_002794.1 + 81111 0.67 0.808712
Target:  5'- -----cCGGCgccGCCCGCcGGCGCCGg- -3'
miRNA:   3'- cacauaGCCG---UGGGCGaCUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 105336 0.67 0.808712
Target:  5'- ----uUCGGCGCUCGUcuccgcgggUGACGUCGUGu -3'
miRNA:   3'- cacauAGCCGUGGGCG---------ACUGCGGCAU- -5'
10921 5' -57.8 NC_002794.1 + 165473 0.68 0.773076
Target:  5'- -cGUcaUGGcCGCCCGCgacgUGAUGCCGUGg -3'
miRNA:   3'- caCAuaGCC-GUGGGCG----ACUGCGGCAU- -5'
10921 5' -57.8 NC_002794.1 + 158459 0.69 0.745051
Target:  5'- cUGUAga-GCGCCCGCUGcagccgguccaGCGCCGUc -3'
miRNA:   3'- cACAUagcCGUGGGCGAC-----------UGCGGCAu -5'
10921 5' -57.8 NC_002794.1 + 160092 0.69 0.735509
Target:  5'- -cGUcgCGGCACCguCGCcGGCGUCGUc -3'
miRNA:   3'- caCAuaGCCGUGG--GCGaCUGCGGCAu -5'
10921 5' -57.8 NC_002794.1 + 176947 0.69 0.725879
Target:  5'- -----aCGGCGCCCGgaCUGGCGCUGg- -3'
miRNA:   3'- cacauaGCCGUGGGC--GACUGCGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.