miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10921 5' -57.8 NC_002794.1 + 95617 0.69 0.716173
Target:  5'- ---gGUCGGCgucaGCCCGCUGAC-CCGc- -3'
miRNA:   3'- cacaUAGCCG----UGGGCGACUGcGGCau -5'
10921 5' -57.8 NC_002794.1 + 183635 0.7 0.686674
Target:  5'- -cGUcggCGGCGCCgGC-GGCGCCGUc -3'
miRNA:   3'- caCAua-GCCGUGGgCGaCUGCGGCAu -5'
10921 5' -57.8 NC_002794.1 + 164526 0.7 0.646773
Target:  5'- -cGgcUCGGCGCCCGCcgUGucCGCCGc- -3'
miRNA:   3'- caCauAGCCGUGGGCG--ACu-GCGGCau -5'
10921 5' -57.8 NC_002794.1 + 173901 0.7 0.646773
Target:  5'- ---cGUCGGCcgcuCCCGC-GGCGCCGUc -3'
miRNA:   3'- cacaUAGCCGu---GGGCGaCUGCGGCAu -5'
10921 5' -57.8 NC_002794.1 + 138454 0.71 0.616701
Target:  5'- -----cCGGCGCCCGC-GugGCCGg- -3'
miRNA:   3'- cacauaGCCGUGGGCGaCugCGGCau -5'
10921 5' -57.8 NC_002794.1 + 147918 0.71 0.596696
Target:  5'- ---gAUCGGCGCCgCGCgucccGGCGCCGg- -3'
miRNA:   3'- cacaUAGCCGUGG-GCGa----CUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 109857 0.72 0.566893
Target:  5'- -----aCGGUuccgaACCCGCUGGCGCCGa- -3'
miRNA:   3'- cacauaGCCG-----UGGGCGACUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 2055 0.72 0.537483
Target:  5'- -----cCGGCGCCCGCucgucUGGCGCCGa- -3'
miRNA:   3'- cacauaGCCGUGGGCG-----ACUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 151301 0.72 0.527794
Target:  5'- -cGg--CGGCGCCCGUUGACGUCa-- -3'
miRNA:   3'- caCauaGCCGUGGGCGACUGCGGcau -5'
10921 5' -57.8 NC_002794.1 + 133161 0.72 0.527794
Target:  5'- cUGUGUCGGCGgCCGCcGACGCg--- -3'
miRNA:   3'- cACAUAGCCGUgGGCGaCUGCGgcau -5'
10921 5' -57.8 NC_002794.1 + 20305 0.73 0.49914
Target:  5'- aUGUGUUGGCgACCCGUUGGaaaccCGCCGg- -3'
miRNA:   3'- cACAUAGCCG-UGGGCGACU-----GCGGCau -5'
10921 5' -57.8 NC_002794.1 + 105772 0.76 0.352755
Target:  5'- uGUGgcUCGGCACgcucugcgCCGCggugGGCGCCGUGa -3'
miRNA:   3'- -CACauAGCCGUG--------GGCGa---CUGCGGCAU- -5'
10921 5' -57.8 NC_002794.1 + 14107 0.76 0.323008
Target:  5'- -----cCGGCcaGCCCGCUGACGCCGa- -3'
miRNA:   3'- cacauaGCCG--UGGGCGACUGCGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.