miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10921 5' -57.8 NC_002794.1 + 2055 0.72 0.537483
Target:  5'- -----cCGGCGCCCGCucgucUGGCGCCGa- -3'
miRNA:   3'- cacauaGCCGUGGGCG-----ACUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 14107 0.76 0.323008
Target:  5'- -----cCGGCcaGCCCGCUGACGCCGa- -3'
miRNA:   3'- cacauaGCCG--UGGGCGACUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 17442 0.66 0.886073
Target:  5'- -cGUGUC-GCACggaCCGCgcgacgggcggUGACGCCGUGu -3'
miRNA:   3'- caCAUAGcCGUG---GGCG-----------ACUGCGGCAU- -5'
10921 5' -57.8 NC_002794.1 + 20305 0.73 0.49914
Target:  5'- aUGUGUUGGCgACCCGUUGGaaaccCGCCGg- -3'
miRNA:   3'- cACAUAGCCG-UGGGCGACU-----GCGGCau -5'
10921 5' -57.8 NC_002794.1 + 58456 0.66 0.864888
Target:  5'- cUGUc-CGGCGUCCGCgGACGCCGc- -3'
miRNA:   3'- cACAuaGCCGUGGGCGaCUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 64299 0.66 0.879221
Target:  5'- cGUGgucggcgCGGCGCCCGUcuUGACgGCCu-- -3'
miRNA:   3'- -CACaua----GCCGUGGGCG--ACUG-CGGcau -5'
10921 5' -57.8 NC_002794.1 + 64585 0.67 0.841895
Target:  5'- -----cCGGCACcaCCGCcGGCGCCGUc -3'
miRNA:   3'- cacauaGCCGUG--GGCGaCUGCGGCAu -5'
10921 5' -57.8 NC_002794.1 + 70029 0.67 0.841895
Target:  5'- ----cUCGGCGCCCuGCUGcuGCGCUGc- -3'
miRNA:   3'- cacauAGCCGUGGG-CGAC--UGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 72033 0.67 0.825641
Target:  5'- -aGgagCGGCGCCCGUcgauccgGAUGCCGg- -3'
miRNA:   3'- caCauaGCCGUGGGCGa------CUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 80271 0.67 0.841895
Target:  5'- -cGUAgCGGCugcggucgACCCGCUcgcccGGCGCCGg- -3'
miRNA:   3'- caCAUaGCCG--------UGGGCGA-----CUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 81111 0.67 0.808712
Target:  5'- -----cCGGCgccGCCCGCcGGCGCCGg- -3'
miRNA:   3'- cacauaGCCG---UGGGCGaCUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 95617 0.69 0.716173
Target:  5'- ---gGUCGGCgucaGCCCGCUGAC-CCGc- -3'
miRNA:   3'- cacaUAGCCG----UGGGCGACUGcGGCau -5'
10921 5' -57.8 NC_002794.1 + 100817 0.66 0.886073
Target:  5'- gGUGg--CGGCGCCCGa-GGCGUaCGUGg -3'
miRNA:   3'- -CACauaGCCGUGGGCgaCUGCG-GCAU- -5'
10921 5' -57.8 NC_002794.1 + 104615 0.67 0.825641
Target:  5'- ---cGUCGggcuGCGCUCGCgGACGCCGUu -3'
miRNA:   3'- cacaUAGC----CGUGGGCGaCUGCGGCAu -5'
10921 5' -57.8 NC_002794.1 + 105336 0.67 0.808712
Target:  5'- ----uUCGGCGCUCGUcuccgcgggUGACGUCGUGu -3'
miRNA:   3'- cacauAGCCGUGGGCG---------ACUGCGGCAU- -5'
10921 5' -57.8 NC_002794.1 + 105772 0.76 0.352755
Target:  5'- uGUGgcUCGGCACgcucugcgCCGCggugGGCGCCGUGa -3'
miRNA:   3'- -CACauAGCCGUG--------GGCGa---CUGCGGCAU- -5'
10921 5' -57.8 NC_002794.1 + 109857 0.72 0.566893
Target:  5'- -----aCGGUuccgaACCCGCUGGCGCCGa- -3'
miRNA:   3'- cacauaGCCG-----UGGGCGACUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 115402 0.66 0.857417
Target:  5'- ---cGUCGGCgGCCCGCUGcccgucuuccGCGUCGa- -3'
miRNA:   3'- cacaUAGCCG-UGGGCGAC----------UGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 123393 0.66 0.879221
Target:  5'- -----cCGGC-CCCGCggcGGCGCCGa- -3'
miRNA:   3'- cacauaGCCGuGGGCGa--CUGCGGCau -5'
10921 5' -57.8 NC_002794.1 + 128484 0.67 0.841895
Target:  5'- cGUGUcgaaagaacgcGUCGGCGCCaGCgucGGCGCCa-- -3'
miRNA:   3'- -CACA-----------UAGCCGUGGgCGa--CUGCGGcau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.