Results 21 - 33 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10921 | 5' | -57.8 | NC_002794.1 | + | 123393 | 0.66 | 0.879221 |
Target: 5'- -----cCGGC-CCCGCggcGGCGCCGa- -3' miRNA: 3'- cacauaGCCGuGGGCGa--CUGCGGCau -5' |
|||||||
10921 | 5' | -57.8 | NC_002794.1 | + | 58456 | 0.66 | 0.864888 |
Target: 5'- cUGUc-CGGCGUCCGCgGACGCCGc- -3' miRNA: 3'- cACAuaGCCGUGGGCGaCUGCGGCau -5' |
|||||||
10921 | 5' | -57.8 | NC_002794.1 | + | 115402 | 0.66 | 0.857417 |
Target: 5'- ---cGUCGGCgGCCCGCUGcccgucuuccGCGUCGa- -3' miRNA: 3'- cacaUAGCCG-UGGGCGAC----------UGCGGCau -5' |
|||||||
10921 | 5' | -57.8 | NC_002794.1 | + | 135220 | 0.66 | 0.849751 |
Target: 5'- -----cCGGCGCCgGC-GGCGCCGg- -3' miRNA: 3'- cacauaGCCGUGGgCGaCUGCGGCau -5' |
|||||||
10921 | 5' | -57.8 | NC_002794.1 | + | 148335 | 0.66 | 0.849751 |
Target: 5'- -----aCGGCACCgGCUGcccuCGCCGa- -3' miRNA: 3'- cacauaGCCGUGGgCGACu---GCGGCau -5' |
|||||||
10921 | 5' | -57.8 | NC_002794.1 | + | 64585 | 0.67 | 0.841895 |
Target: 5'- -----cCGGCACcaCCGCcGGCGCCGUc -3' miRNA: 3'- cacauaGCCGUG--GGCGaCUGCGGCAu -5' |
|||||||
10921 | 5' | -57.8 | NC_002794.1 | + | 70029 | 0.67 | 0.841895 |
Target: 5'- ----cUCGGCGCCCuGCUGcuGCGCUGc- -3' miRNA: 3'- cacauAGCCGUGGG-CGAC--UGCGGCau -5' |
|||||||
10921 | 5' | -57.8 | NC_002794.1 | + | 80271 | 0.67 | 0.841895 |
Target: 5'- -cGUAgCGGCugcggucgACCCGCUcgcccGGCGCCGg- -3' miRNA: 3'- caCAUaGCCG--------UGGGCGA-----CUGCGGCau -5' |
|||||||
10921 | 5' | -57.8 | NC_002794.1 | + | 72033 | 0.67 | 0.825641 |
Target: 5'- -aGgagCGGCGCCCGUcgauccgGAUGCCGg- -3' miRNA: 3'- caCauaGCCGUGGGCGa------CUGCGGCau -5' |
|||||||
10921 | 5' | -57.8 | NC_002794.1 | + | 104615 | 0.67 | 0.825641 |
Target: 5'- ---cGUCGggcuGCGCUCGCgGACGCCGUu -3' miRNA: 3'- cacaUAGC----CGUGGGCGaCUGCGGCAu -5' |
|||||||
10921 | 5' | -57.8 | NC_002794.1 | + | 128484 | 0.67 | 0.841895 |
Target: 5'- cGUGUcgaaagaacgcGUCGGCGCCaGCgucGGCGCCa-- -3' miRNA: 3'- -CACA-----------UAGCCGUGGgCGa--CUGCGGcau -5' |
|||||||
10921 | 5' | -57.8 | NC_002794.1 | + | 165473 | 0.68 | 0.773076 |
Target: 5'- -cGUcaUGGcCGCCCGCgacgUGAUGCCGUGg -3' miRNA: 3'- caCAuaGCC-GUGGGCG----ACUGCGGCAU- -5' |
|||||||
10921 | 5' | -57.8 | NC_002794.1 | + | 105772 | 0.76 | 0.352755 |
Target: 5'- uGUGgcUCGGCACgcucugcgCCGCggugGGCGCCGUGa -3' miRNA: 3'- -CACauAGCCGUG--------GGCGa---CUGCGGCAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home