miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 3' -55.7 NC_002794.1 + 8403 0.66 0.952348
Target:  5'- -cCGCCgcuCGGCGucgcUCGGCGcGCg -3'
miRNA:   3'- uaGCGGguuGCCGCuua-AGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 53507 0.66 0.952348
Target:  5'- --gGCggaGGCGGCGGAggCGGCGgaGGCg -3'
miRNA:   3'- uagCGgg-UUGCCGCUUaaGCCGC--UCG- -5'
10922 3' -55.7 NC_002794.1 + 177052 0.66 0.952348
Target:  5'- -cCGgCCAAcggguCGGCGAccUCGGCcGGCg -3'
miRNA:   3'- uaGCgGGUU-----GCCGCUuaAGCCGcUCG- -5'
10922 3' -55.7 NC_002794.1 + 131931 0.66 0.952348
Target:  5'- -cCGCCCGGcCGGCGAGUcUCGagucCGAcGCc -3'
miRNA:   3'- uaGCGGGUU-GCCGCUUA-AGCc---GCU-CG- -5'
10922 3' -55.7 NC_002794.1 + 113702 0.66 0.952348
Target:  5'- --gGCCCGACGGCuc---CGGCgcccGAGCc -3'
miRNA:   3'- uagCGGGUUGCCGcuuaaGCCG----CUCG- -5'
10922 3' -55.7 NC_002794.1 + 2070 0.66 0.952348
Target:  5'- gAUCGCCCGACGaCGc---CGGCGcccGCu -3'
miRNA:   3'- -UAGCGGGUUGCcGCuuaaGCCGCu--CG- -5'
10922 3' -55.7 NC_002794.1 + 171847 0.66 0.952348
Target:  5'- -cCGCCguCAccGCGGCGcc-UCGGCGAcgGCg -3'
miRNA:   3'- uaGCGG--GU--UGCCGCuuaAGCCGCU--CG- -5'
10922 3' -55.7 NC_002794.1 + 85357 0.66 0.951948
Target:  5'- -gCGCCUGGagaaaguCGGuCGAGaUCGGCGuGCg -3'
miRNA:   3'- uaGCGGGUU-------GCC-GCUUaAGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 35527 0.66 0.949918
Target:  5'- -gCGCggAugGGCGAcgaauuugaccgCGGCGAGCg -3'
miRNA:   3'- uaGCGggUugCCGCUuaa---------GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 171893 0.66 0.948254
Target:  5'- -cCGagCCAGCGGCGAGgcCGGCGc-- -3'
miRNA:   3'- uaGCg-GGUUGCCGCUUaaGCCGCucg -5'
10922 3' -55.7 NC_002794.1 + 158046 0.66 0.948254
Target:  5'- gGUCGCUCccgccgucACGGCGA---CGGCG-GCu -3'
miRNA:   3'- -UAGCGGGu-------UGCCGCUuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 142644 0.66 0.948254
Target:  5'- cGUCGUCgAGCGGCGAaacgguccGUccUCGGCccGCc -3'
miRNA:   3'- -UAGCGGgUUGCCGCU--------UA--AGCCGcuCG- -5'
10922 3' -55.7 NC_002794.1 + 62478 0.66 0.948254
Target:  5'- cGUCGUCCGGCGGUcauGA--UCGGCccggGGGUc -3'
miRNA:   3'- -UAGCGGGUUGCCG---CUuaAGCCG----CUCG- -5'
10922 3' -55.7 NC_002794.1 + 14462 0.66 0.945689
Target:  5'- uUCGCCCGGgccggccgccgccacCGccauguccGCGAAgccgUCGGCGAGg -3'
miRNA:   3'- uAGCGGGUU---------------GC--------CGCUUa---AGCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 72081 0.66 0.943934
Target:  5'- -aCGCCUccguguuggaGGCGGUGGcgccGUUCGG-GGGCg -3'
miRNA:   3'- uaGCGGG----------UUGCCGCU----UAAGCCgCUCG- -5'
10922 3' -55.7 NC_002794.1 + 162990 0.66 0.943934
Target:  5'- -cCGgCgGGCGGCGGcggCGGCG-GCg -3'
miRNA:   3'- uaGCgGgUUGCCGCUuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 103544 0.66 0.943934
Target:  5'- --gGCgCgGGCGGCGGGggcccgGGCGGGCg -3'
miRNA:   3'- uagCG-GgUUGCCGCUUaag---CCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 106935 0.66 0.943934
Target:  5'- -aUGCCCGcgguGCGGCGA---UGGCGcGGUg -3'
miRNA:   3'- uaGCGGGU----UGCCGCUuaaGCCGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 26413 0.66 0.943934
Target:  5'- gAUUGCUacggugCAACGGUGggUUCGG--GGCg -3'
miRNA:   3'- -UAGCGG------GUUGCCGCuuAAGCCgcUCG- -5'
10922 3' -55.7 NC_002794.1 + 75820 0.66 0.943934
Target:  5'- cGUCGUCaUGACGGCGGcggUGGCGGccGCg -3'
miRNA:   3'- -UAGCGG-GUUGCCGCUuaaGCCGCU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.