miRNA display CGI


Results 41 - 60 of 234 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 3' -55.7 NC_002794.1 + 162990 0.66 0.943934
Target:  5'- -cCGgCgGGCGGCGGcggCGGCG-GCg -3'
miRNA:   3'- uaGCgGgUUGCCGCUuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 103544 0.66 0.943934
Target:  5'- --gGCgCgGGCGGCGGGggcccgGGCGGGCg -3'
miRNA:   3'- uagCG-GgUUGCCGCUUaag---CCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 106935 0.66 0.943934
Target:  5'- -aUGCCCGcgguGCGGCGA---UGGCGcGGUg -3'
miRNA:   3'- uaGCGGGU----UGCCGCUuaaGCCGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 26413 0.66 0.943934
Target:  5'- gAUUGCUacggugCAACGGUGggUUCGG--GGCg -3'
miRNA:   3'- -UAGCGG------GUUGCCGCuuAAGCCgcUCG- -5'
10922 3' -55.7 NC_002794.1 + 75820 0.66 0.943934
Target:  5'- cGUCGUCaUGACGGCGGcggUGGCGGccGCg -3'
miRNA:   3'- -UAGCGG-GUUGCCGCUuaaGCCGCU--CG- -5'
10922 3' -55.7 NC_002794.1 + 171893 0.66 0.948254
Target:  5'- -cCGagCCAGCGGCGAGgcCGGCGc-- -3'
miRNA:   3'- uaGCg-GGUUGCCGCUUaaGCCGCucg -5'
10922 3' -55.7 NC_002794.1 + 14462 0.66 0.945689
Target:  5'- uUCGCCCGGgccggccgccgccacCGccauguccGCGAAgccgUCGGCGAGg -3'
miRNA:   3'- uAGCGGGUU---------------GC--------CGCUUa---AGCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 75736 0.67 0.924349
Target:  5'- -gCGCgCGACGGCGAccggGGaCGGGCc -3'
miRNA:   3'- uaGCGgGUUGCCGCUuaagCC-GCUCG- -5'
10922 3' -55.7 NC_002794.1 + 6025 0.67 0.918871
Target:  5'- -cCGCCaCAGCGGgGuc-UCGGCcgcgGAGCc -3'
miRNA:   3'- uaGCGG-GUUGCCgCuuaAGCCG----CUCG- -5'
10922 3' -55.7 NC_002794.1 + 104643 0.67 0.918871
Target:  5'- -gCGaCgCGACGGCGGA--CGGCGcGGCg -3'
miRNA:   3'- uaGC-GgGUUGCCGCUUaaGCCGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 94378 0.67 0.918871
Target:  5'- -cCGCCCGAaacgcCGGCGGc--CGGUccGAGCg -3'
miRNA:   3'- uaGCGGGUU-----GCCGCUuaaGCCG--CUCG- -5'
10922 3' -55.7 NC_002794.1 + 174397 0.67 0.918311
Target:  5'- cGUCGCCgugacggCAACGGUGGcagCGGCuucgGAGCc -3'
miRNA:   3'- -UAGCGG-------GUUGCCGCUuaaGCCG----CUCG- -5'
10922 3' -55.7 NC_002794.1 + 54411 0.67 0.923811
Target:  5'- -gCGCCgGgagcggcGCGGCGuccggacUGGCGAGCa -3'
miRNA:   3'- uaGCGGgU-------UGCCGCuuaa---GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 39876 0.67 0.918871
Target:  5'- uGUCGaaCCGACGaCGAucUCGGaCGAGCg -3'
miRNA:   3'- -UAGCg-GGUUGCcGCUuaAGCC-GCUCG- -5'
10922 3' -55.7 NC_002794.1 + 53645 0.67 0.918871
Target:  5'- --gGCggCAGCGGCGGug-CGGgGAGCg -3'
miRNA:   3'- uagCGg-GUUGCCGCUuaaGCCgCUCG- -5'
10922 3' -55.7 NC_002794.1 + 58233 0.67 0.918871
Target:  5'- -gUGCCC-ACGaCGAcgUCcuGGCGGGCg -3'
miRNA:   3'- uaGCGGGuUGCcGCUuaAG--CCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 1597 0.67 0.924349
Target:  5'- cUCGCCCGACGcCGccucgcaCGGCGcGCg -3'
miRNA:   3'- uAGCGGGUUGCcGCuuaa---GCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 46588 0.67 0.924349
Target:  5'- cGUC-CCCGcCGGCGGcg-CGGCG-GCu -3'
miRNA:   3'- -UAGcGGGUuGCCGCUuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 80675 0.67 0.924349
Target:  5'- --gGCCCGGugcCGGCGGucgagcCGGCGuAGCg -3'
miRNA:   3'- uagCGGGUU---GCCGCUuaa---GCCGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 176415 0.67 0.918871
Target:  5'- --gGCCCcgagcgggcacgAGCGGCGGcggCGGCGGGa -3'
miRNA:   3'- uagCGGG------------UUGCCGCUuaaGCCGCUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.