Results 1 - 20 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10922 | 3' | -55.7 | NC_002794.1 | + | 78916 | 0.9 | 0.068381 |
Target: 5'- cGUC-CCCGGCGGCGGcgUCGGCGGGCg -3' miRNA: 3'- -UAGcGGGUUGCCGCUuaAGCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 133971 | 0.82 | 0.232417 |
Target: 5'- -gCGCCgcGCGGCGAGcgCGGCGAGCg -3' miRNA: 3'- uaGCGGguUGCCGCUUaaGCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 124066 | 0.81 | 0.255621 |
Target: 5'- aGUCGCCCccCGGCGGGcgCGGCGAGg -3' miRNA: 3'- -UAGCGGGuuGCCGCUUaaGCCGCUCg -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 61737 | 0.8 | 0.274246 |
Target: 5'- -cCGUCCGACGGCG----CGGCGAGCg -3' miRNA: 3'- uaGCGGGUUGCCGCuuaaGCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 129937 | 0.8 | 0.293941 |
Target: 5'- cGUCGCCggCGGCGGUGGcgUCGGCG-GCg -3' miRNA: 3'- -UAGCGG--GUUGCCGCUuaAGCCGCuCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 151156 | 0.8 | 0.293941 |
Target: 5'- -cCGCCCGgccgcgaccGCGGCGAcgUCGGCcGGCg -3' miRNA: 3'- uaGCGGGU---------UGCCGCUuaAGCCGcUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 163597 | 0.79 | 0.321893 |
Target: 5'- -gCGCUCGACGGcCGGccgaUCGGCGAGCg -3' miRNA: 3'- uaGCGGGUUGCC-GCUua--AGCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 2120 | 0.79 | 0.329184 |
Target: 5'- -cCGCCC-GCGGC---UUCGGCGAGCg -3' miRNA: 3'- uaGCGGGuUGCCGcuuAAGCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 130619 | 0.77 | 0.400193 |
Target: 5'- gGUCGCCgCGGCGGCGAuc-CGGCcucgccGAGCg -3' miRNA: 3'- -UAGCGG-GUUGCCGCUuaaGCCG------CUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 116429 | 0.77 | 0.400193 |
Target: 5'- --gGCCCGGCGGCGGcggCGGCGAccgGCg -3' miRNA: 3'- uagCGGGUUGCCGCUuaaGCCGCU---CG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 108515 | 0.77 | 0.42594 |
Target: 5'- uUC-CCCAGCaGCGggUccggCGGCGAGCg -3' miRNA: 3'- uAGcGGGUUGcCGCuuAa---GCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 70218 | 0.76 | 0.470949 |
Target: 5'- -gCGCCUAGCGGCGuucugccUCGGCGcGCu -3' miRNA: 3'- uaGCGGGUUGCCGCuua----AGCCGCuCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 7616 | 0.76 | 0.470949 |
Target: 5'- cGUCGaCCGGCGGCGGcggcgguagCGGCGGGCc -3' miRNA: 3'- -UAGCgGGUUGCCGCUuaa------GCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 133381 | 0.76 | 0.470949 |
Target: 5'- -gCGCCuCGACGagcGCGAGUggaCGGCGGGCg -3' miRNA: 3'- uaGCGG-GUUGC---CGCUUAa--GCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 77648 | 0.76 | 0.480241 |
Target: 5'- cGUCGCCUcgcgGACGGCcacgcagcucugGAGgaugUCGGCGGGCu -3' miRNA: 3'- -UAGCGGG----UUGCCG------------CUUa---AGCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 76148 | 0.75 | 0.48962 |
Target: 5'- --gGCCaCAACGGCGGcUUCGGCaccGGGCg -3' miRNA: 3'- uagCGG-GUUGCCGCUuAAGCCG---CUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 121121 | 0.74 | 0.567327 |
Target: 5'- cGUCGaCCCAACGcuGCGAAUUCuGCGAcaGCg -3' miRNA: 3'- -UAGC-GGGUUGC--CGCUUAAGcCGCU--CG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 80035 | 0.74 | 0.567327 |
Target: 5'- -cCGCCUggauCGGCGGGgccCGGCGGGCu -3' miRNA: 3'- uaGCGGGuu--GCCGCUUaa-GCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 85423 | 0.74 | 0.577298 |
Target: 5'- uGUCGUcgUCggUGGCGGAggcCGGCGAGCc -3' miRNA: 3'- -UAGCG--GGuuGCCGCUUaa-GCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 195005 | 0.74 | 0.576299 |
Target: 5'- uUCgGCCCAGCGcgcgcccGCGAGgcggUCGGCGuGCg -3' miRNA: 3'- uAG-CGGGUUGC-------CGCUUa---AGCCGCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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