miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 3' -55.7 NC_002794.1 + 78916 0.9 0.068381
Target:  5'- cGUC-CCCGGCGGCGGcgUCGGCGGGCg -3'
miRNA:   3'- -UAGcGGGUUGCCGCUuaAGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 133971 0.82 0.232417
Target:  5'- -gCGCCgcGCGGCGAGcgCGGCGAGCg -3'
miRNA:   3'- uaGCGGguUGCCGCUUaaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 124066 0.81 0.255621
Target:  5'- aGUCGCCCccCGGCGGGcgCGGCGAGg -3'
miRNA:   3'- -UAGCGGGuuGCCGCUUaaGCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 61737 0.8 0.274246
Target:  5'- -cCGUCCGACGGCG----CGGCGAGCg -3'
miRNA:   3'- uaGCGGGUUGCCGCuuaaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 129937 0.8 0.293941
Target:  5'- cGUCGCCggCGGCGGUGGcgUCGGCG-GCg -3'
miRNA:   3'- -UAGCGG--GUUGCCGCUuaAGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 151156 0.8 0.293941
Target:  5'- -cCGCCCGgccgcgaccGCGGCGAcgUCGGCcGGCg -3'
miRNA:   3'- uaGCGGGU---------UGCCGCUuaAGCCGcUCG- -5'
10922 3' -55.7 NC_002794.1 + 163597 0.79 0.321893
Target:  5'- -gCGCUCGACGGcCGGccgaUCGGCGAGCg -3'
miRNA:   3'- uaGCGGGUUGCC-GCUua--AGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 2120 0.79 0.329184
Target:  5'- -cCGCCC-GCGGC---UUCGGCGAGCg -3'
miRNA:   3'- uaGCGGGuUGCCGcuuAAGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 116429 0.77 0.400193
Target:  5'- --gGCCCGGCGGCGGcggCGGCGAccgGCg -3'
miRNA:   3'- uagCGGGUUGCCGCUuaaGCCGCU---CG- -5'
10922 3' -55.7 NC_002794.1 + 130619 0.77 0.400193
Target:  5'- gGUCGCCgCGGCGGCGAuc-CGGCcucgccGAGCg -3'
miRNA:   3'- -UAGCGG-GUUGCCGCUuaaGCCG------CUCG- -5'
10922 3' -55.7 NC_002794.1 + 108515 0.77 0.42594
Target:  5'- uUC-CCCAGCaGCGggUccggCGGCGAGCg -3'
miRNA:   3'- uAGcGGGUUGcCGCuuAa---GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 133381 0.76 0.470949
Target:  5'- -gCGCCuCGACGagcGCGAGUggaCGGCGGGCg -3'
miRNA:   3'- uaGCGG-GUUGC---CGCUUAa--GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 7616 0.76 0.470949
Target:  5'- cGUCGaCCGGCGGCGGcggcgguagCGGCGGGCc -3'
miRNA:   3'- -UAGCgGGUUGCCGCUuaa------GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 70218 0.76 0.470949
Target:  5'- -gCGCCUAGCGGCGuucugccUCGGCGcGCu -3'
miRNA:   3'- uaGCGGGUUGCCGCuua----AGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 77648 0.76 0.480241
Target:  5'- cGUCGCCUcgcgGACGGCcacgcagcucugGAGgaugUCGGCGGGCu -3'
miRNA:   3'- -UAGCGGG----UUGCCG------------CUUa---AGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 76148 0.75 0.48962
Target:  5'- --gGCCaCAACGGCGGcUUCGGCaccGGGCg -3'
miRNA:   3'- uagCGG-GUUGCCGCUuAAGCCG---CUCG- -5'
10922 3' -55.7 NC_002794.1 + 138356 0.74 0.5574
Target:  5'- -gCGCCCGccgccuACGGCGAGUUCGuGCucAGCa -3'
miRNA:   3'- uaGCGGGU------UGCCGCUUAAGC-CGc-UCG- -5'
10922 3' -55.7 NC_002794.1 + 121121 0.74 0.567327
Target:  5'- cGUCGaCCCAACGcuGCGAAUUCuGCGAcaGCg -3'
miRNA:   3'- -UAGC-GGGUUGC--CGCUUAAGcCGCU--CG- -5'
10922 3' -55.7 NC_002794.1 + 80035 0.74 0.567327
Target:  5'- -cCGCCUggauCGGCGGGgccCGGCGGGCu -3'
miRNA:   3'- uaGCGGGuu--GCCGCUUaa-GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 195005 0.74 0.576299
Target:  5'- uUCgGCCCAGCGcgcgcccGCGAGgcggUCGGCGuGCg -3'
miRNA:   3'- uAG-CGGGUUGC-------CGCUUa---AGCCGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.