miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 3' -55.7 NC_002794.1 + 85423 0.74 0.577298
Target:  5'- uGUCGUcgUCggUGGCGGAggcCGGCGAGCc -3'
miRNA:   3'- -UAGCG--GGuuGCCGCUUaa-GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 70427 0.73 0.607413
Target:  5'- cGUCGCgaaucggaaCAAgGGCGAcggCGGCGAGCa -3'
miRNA:   3'- -UAGCGg--------GUUgCCGCUuaaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 3999 0.73 0.617497
Target:  5'- gGUCGUgaaaggCCGGCGGCGGAgggggCGGCGgaGGCg -3'
miRNA:   3'- -UAGCG------GGUUGCCGCUUaa---GCCGC--UCG- -5'
10922 3' -55.7 NC_002794.1 + 45058 0.73 0.617497
Target:  5'- --gGCCCcGCGGCGGA--CGGcCGAGCc -3'
miRNA:   3'- uagCGGGuUGCCGCUUaaGCC-GCUCG- -5'
10922 3' -55.7 NC_002794.1 + 79732 0.73 0.617497
Target:  5'- -cCGCCgCGGCGGCGGcggCGGCG-GCc -3'
miRNA:   3'- uaGCGG-GUUGCCGCUuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 53720 0.73 0.627592
Target:  5'- -cCGCCgGgucACGGCGGAggCGGCGguAGCa -3'
miRNA:   3'- uaGCGGgU---UGCCGCUUaaGCCGC--UCG- -5'
10922 3' -55.7 NC_002794.1 + 14691 0.73 0.637689
Target:  5'- -cCGCgCCGACGGCGAA--CGGCGGa- -3'
miRNA:   3'- uaGCG-GGUUGCCGCUUaaGCCGCUcg -5'
10922 3' -55.7 NC_002794.1 + 176373 0.73 0.637689
Target:  5'- gGUCGCCCGcaccgacgACGGCGGAggUCGcGCcgcucgGAGCg -3'
miRNA:   3'- -UAGCGGGU--------UGCCGCUUa-AGC-CG------CUCG- -5'
10922 3' -55.7 NC_002794.1 + 104948 0.73 0.647783
Target:  5'- cAUCGuguCCCGcacggaggaccACGGCGAcgUgGGCGGGCu -3'
miRNA:   3'- -UAGC---GGGU-----------UGCCGCUuaAgCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 108938 0.73 0.647783
Target:  5'- -aCGCCCGuggcgggcaggcGgGGCGGGaucCGGCGAGCg -3'
miRNA:   3'- uaGCGGGU------------UgCCGCUUaa-GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 152908 0.73 0.647783
Target:  5'- uGUCGCCCAgcACGGCGugGAUguaGGCcAGCu -3'
miRNA:   3'- -UAGCGGGU--UGCCGC--UUAag-CCGcUCG- -5'
10922 3' -55.7 NC_002794.1 + 82202 0.73 0.647783
Target:  5'- -gCGUCCu-CGGCGuccagcgCGGCGAGCa -3'
miRNA:   3'- uaGCGGGuuGCCGCuuaa---GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 142236 0.72 0.657864
Target:  5'- -gCGUCgGACGGaCGAggUCGGcCGAGCc -3'
miRNA:   3'- uaGCGGgUUGCC-GCUuaAGCC-GCUCG- -5'
10922 3' -55.7 NC_002794.1 + 2535 0.72 0.657864
Target:  5'- -gCGCCCGAUcgguuccaGGCGG--UCGuGCGAGCa -3'
miRNA:   3'- uaGCGGGUUG--------CCGCUuaAGC-CGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 57285 0.72 0.657864
Target:  5'- cGUCGCUCGAUcgaGGCGcg-UCGGCGcGGCg -3'
miRNA:   3'- -UAGCGGGUUG---CCGCuuaAGCCGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 181312 0.72 0.657864
Target:  5'- cUCGCCCccgucGACGcGCGGGa--GGCGAGCc -3'
miRNA:   3'- uAGCGGG-----UUGC-CGCUUaagCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 43229 0.72 0.667925
Target:  5'- cUCGUCCuggGCGGCGuucgagCGGCGAGa -3'
miRNA:   3'- uAGCGGGu--UGCCGCuuaa--GCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 16195 0.72 0.667925
Target:  5'- cUCGCCgGACGGCacccgCGGCG-GCg -3'
miRNA:   3'- uAGCGGgUUGCCGcuuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 83509 0.72 0.667925
Target:  5'- --gGCgCCGGCGGCGGgg-CGGgGAGCu -3'
miRNA:   3'- uagCG-GGUUGCCGCUuaaGCCgCUCG- -5'
10922 3' -55.7 NC_002794.1 + 79207 0.72 0.667925
Target:  5'- -cCGUCCGGCucuugaGGCGcugcUCGGCGAGCg -3'
miRNA:   3'- uaGCGGGUUG------CCGCuua-AGCCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.