miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 3' -55.7 NC_002794.1 + 43229 0.72 0.667925
Target:  5'- cUCGUCCuggGCGGCGuucgagCGGCGAGa -3'
miRNA:   3'- uAGCGGGu--UGCCGCuuaa--GCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 15009 0.72 0.674952
Target:  5'- cGUCGUCUAcggccucgucggagGCGGCGGAUcCGGCGcGCc -3'
miRNA:   3'- -UAGCGGGU--------------UGCCGCUUAaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 101854 0.72 0.677959
Target:  5'- --gGCgCCGGCGGCGGGc-CGGCGGGUu -3'
miRNA:   3'- uagCG-GGUUGCCGCUUaaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 54261 0.72 0.677959
Target:  5'- cGUCGCCgGGCGGC----UCGGCGAccgGCu -3'
miRNA:   3'- -UAGCGGgUUGCCGcuuaAGCCGCU---CG- -5'
10922 3' -55.7 NC_002794.1 + 81105 0.72 0.677959
Target:  5'- -cCGCCCGcCGGCGccGGUccUCGGCG-GCg -3'
miRNA:   3'- uaGCGGGUuGCCGC--UUA--AGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 142080 0.72 0.677959
Target:  5'- -aCGCCCGcgacgcgccCGGCGggUuucUCGGCGGGa -3'
miRNA:   3'- uaGCGGGUu--------GCCGCuuA---AGCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 178745 0.72 0.687955
Target:  5'- gAUCGCCUuuccGACGGuCGAAgcCGGCGAaacgGCg -3'
miRNA:   3'- -UAGCGGG----UUGCC-GCUUaaGCCGCU----CG- -5'
10922 3' -55.7 NC_002794.1 + 151568 0.72 0.687955
Target:  5'- -gCGCCCGccgggcCGGCGAgg-CGGgGAGCg -3'
miRNA:   3'- uaGCGGGUu-----GCCGCUuaaGCCgCUCG- -5'
10922 3' -55.7 NC_002794.1 + 74005 0.71 0.705829
Target:  5'- uUCGCCCGAucCGGUGuuacugccaCGGCGAGUu -3'
miRNA:   3'- uAGCGGGUU--GCCGCuuaa-----GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 87551 0.71 0.707804
Target:  5'- cGUUGCgCCGGCGGUGggUcuuggaCGGCGGcGCa -3'
miRNA:   3'- -UAGCG-GGUUGCCGCuuAa-----GCCGCU-CG- -5'
10922 3' -55.7 NC_002794.1 + 183655 0.71 0.707804
Target:  5'- -cCGCUCGGacgugcCGGCGGcgUCGGCG-GCg -3'
miRNA:   3'- uaGCGGGUU------GCCGCUuaAGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 41492 0.71 0.707804
Target:  5'- --gGUCCAggccGCGGCGg---CGGCGGGCa -3'
miRNA:   3'- uagCGGGU----UGCCGCuuaaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 157918 0.71 0.707804
Target:  5'- -cCGCCCGugccuCGGCGAcucgcUCGGCG-GCu -3'
miRNA:   3'- uaGCGGGUu----GCCGCUua---AGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 67777 0.71 0.727404
Target:  5'- aAUgGCCCGAguCGGCGA---CGGgGAGCu -3'
miRNA:   3'- -UAgCGGGUU--GCCGCUuaaGCCgCUCG- -5'
10922 3' -55.7 NC_002794.1 + 48175 0.71 0.727404
Target:  5'- cUCGaggaCCCGGCGGCGAug-CGGCGcacguGCg -3'
miRNA:   3'- uAGC----GGGUUGCCGCUuaaGCCGCu----CG- -5'
10922 3' -55.7 NC_002794.1 + 50115 0.71 0.737088
Target:  5'- -gCGCCggcauCGACGGCGAcccCGaGCGAGCg -3'
miRNA:   3'- uaGCGG-----GUUGCCGCUuaaGC-CGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 15114 0.71 0.737088
Target:  5'- -cCGUCCGGCuccucGGCGGcUUCGGCG-GCa -3'
miRNA:   3'- uaGCGGGUUG-----CCGCUuAAGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 133784 0.71 0.737088
Target:  5'- -aCG-CCGGCGGCGAcgaCGGCGAcGCg -3'
miRNA:   3'- uaGCgGGUUGCCGCUuaaGCCGCU-CG- -5'
10922 3' -55.7 NC_002794.1 + 104135 0.71 0.746683
Target:  5'- cAUCGCCUucuucuCGGCGGccaacaagGUgcCGGCGGGCg -3'
miRNA:   3'- -UAGCGGGuu----GCCGCU--------UAa-GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 113036 0.71 0.746683
Target:  5'- cUCGCUCGagagacgcACGGCGAGcgCGagcGCGAGCg -3'
miRNA:   3'- uAGCGGGU--------UGCCGCUUaaGC---CGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.