miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 3' -55.7 NC_002794.1 + 100032 0.66 0.943934
Target:  5'- --gGCCgggggagcggCGGCGGCGGccggggaggCGGCGGGCg -3'
miRNA:   3'- uagCGG----------GUUGCCGCUuaa------GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 126925 0.66 0.942593
Target:  5'- cGUCGCCCGcgggccGCGGCGccggCGccucucccuccuccGCGGGCc -3'
miRNA:   3'- -UAGCGGGU------UGCCGCuuaaGC--------------CGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 99976 0.66 0.939385
Target:  5'- -gCGaCCCGGCGGCGAGggCGcacgacgugguGCGGGa -3'
miRNA:   3'- uaGC-GGGUUGCCGCUUaaGC-----------CGCUCg -5'
10922 3' -55.7 NC_002794.1 + 87434 0.66 0.939385
Target:  5'- -gCGCCCAccccgcgaccgGCGGCacucgCGGCG-GCg -3'
miRNA:   3'- uaGCGGGU-----------UGCCGcuuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 50889 0.66 0.939385
Target:  5'- -gCGCCuCGACGGUGucgcgacCGGCGccgGGCg -3'
miRNA:   3'- uaGCGG-GUUGCCGCuuaa---GCCGC---UCG- -5'
10922 3' -55.7 NC_002794.1 + 83053 0.66 0.939385
Target:  5'- -cCGCCCAGCGcaGCGucugcUCGGCcgccGAGUa -3'
miRNA:   3'- uaGCGGGUUGC--CGCuua--AGCCG----CUCG- -5'
10922 3' -55.7 NC_002794.1 + 162112 0.66 0.939385
Target:  5'- -aCG-CCggUGGCGcaccuGUaCGGCGAGCu -3'
miRNA:   3'- uaGCgGGuuGCCGCu----UAaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 94593 0.66 0.939385
Target:  5'- -cCGCCCc-CGGCGccGGUggcggCGGCGGGg -3'
miRNA:   3'- uaGCGGGuuGCCGC--UUAa----GCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 62870 0.66 0.939385
Target:  5'- gGUCGCCgAGCguacguuaucGGCGAuuacgacgUCGGCGAu- -3'
miRNA:   3'- -UAGCGGgUUG----------CCGCUua------AGCCGCUcg -5'
10922 3' -55.7 NC_002794.1 + 87985 0.66 0.939385
Target:  5'- cAUCGCggaGGCGGCG----CGGCGGGUg -3'
miRNA:   3'- -UAGCGgg-UUGCCGCuuaaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 146350 0.66 0.939385
Target:  5'- cGUCGCUCGcCGGguacaUGggUUCGcgcgccGCGAGCa -3'
miRNA:   3'- -UAGCGGGUuGCC-----GCuuAAGC------CGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 15793 0.66 0.938917
Target:  5'- -gCGCUCAgagucaaGCGGCGGAcgguaUCGGUGcGCa -3'
miRNA:   3'- uaGCGGGU-------UGCCGCUUa----AGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 117544 0.66 0.938447
Target:  5'- cUCGCCCucucccggcgcGACgGGCGGAggcgccggaaugUCGGCcAGCa -3'
miRNA:   3'- uAGCGGG-----------UUG-CCGCUUa-----------AGCCGcUCG- -5'
10922 3' -55.7 NC_002794.1 + 142349 0.66 0.934605
Target:  5'- gGUCGCCCAguagAUGGaGAAgccgUgGGCGcGGCg -3'
miRNA:   3'- -UAGCGGGU----UGCCgCUUa---AgCCGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 102844 0.66 0.934605
Target:  5'- cGUgGUgCAGCGGCGGAaccCGGUGcGCg -3'
miRNA:   3'- -UAgCGgGUUGCCGCUUaa-GCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 129131 0.66 0.934605
Target:  5'- -cCGCCaccgcCGGCGGuggCGGCGGcGCg -3'
miRNA:   3'- uaGCGGguu--GCCGCUuaaGCCGCU-CG- -5'
10922 3' -55.7 NC_002794.1 + 123281 0.66 0.934605
Target:  5'- -cCGCCCAACaGCGcGUUCaGCGcGUc -3'
miRNA:   3'- uaGCGGGUUGcCGCuUAAGcCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 81982 0.66 0.934605
Target:  5'- -gCGCUCGgccGCGGCGcGcgUCGGCGcGGUc -3'
miRNA:   3'- uaGCGGGU---UGCCGC-UuaAGCCGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 73382 0.66 0.934605
Target:  5'- cUCGCCCAGgccgGGCuGAAcgagUCGGCGccGCa -3'
miRNA:   3'- uAGCGGGUUg---CCG-CUUa---AGCCGCu-CG- -5'
10922 3' -55.7 NC_002794.1 + 110953 0.66 0.934605
Target:  5'- -cUGCCCAugGGUucgGAAccCGGCgcgGAGCg -3'
miRNA:   3'- uaGCGGGUugCCG---CUUaaGCCG---CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.