miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 3' -55.7 NC_002794.1 + 142349 0.66 0.934605
Target:  5'- gGUCGCCCAguagAUGGaGAAgccgUgGGCGcGGCg -3'
miRNA:   3'- -UAGCGGGU----UGCCgCUUa---AgCCGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 6993 0.66 0.934605
Target:  5'- cGUCGUCCGacagcagcaggaACGGCcagcagUGGCGGGCc -3'
miRNA:   3'- -UAGCGGGU------------UGCCGcuuaa-GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 8084 0.66 0.933621
Target:  5'- gGUCGCCUcgaccccggaggAACGGCccgcgaagCGaGCGAGCg -3'
miRNA:   3'- -UAGCGGG------------UUGCCGcuuaa---GC-CGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 45019 0.66 0.933126
Target:  5'- cGUCaGCuCCAGCGGCGGccgcgucuacgccuAUagcCGGCGcAGCg -3'
miRNA:   3'- -UAG-CG-GGUUGCCGCU--------------UAa--GCCGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 183934 0.66 0.929593
Target:  5'- -aCGgCCA-CGGUGAucgcgaucgCGGUGAGCg -3'
miRNA:   3'- uaGCgGGUuGCCGCUuaa------GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 54018 0.66 0.929593
Target:  5'- gAUCGCUCGGCGGUuggaaGAgcgAUUCGGUGGu- -3'
miRNA:   3'- -UAGCGGGUUGCCG-----CU---UAAGCCGCUcg -5'
10922 3' -55.7 NC_002794.1 + 11360 0.66 0.928044
Target:  5'- -aCGCCCgGGCGGCGcgggccccgcgcgCGGCGcgGGCg -3'
miRNA:   3'- uaGCGGG-UUGCCGCuuaa---------GCCGC--UCG- -5'
10922 3' -55.7 NC_002794.1 + 158908 0.67 0.925947
Target:  5'- cGUCGCgCGGCGGCaggcagucgcgcagGAGgaucgcgcgcaggUCGGCGAGg -3'
miRNA:   3'- -UAGCGgGUUGCCG--------------CUUa------------AGCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 1597 0.67 0.924349
Target:  5'- cUCGCCCGACGcCGccucgcaCGGCGcGCg -3'
miRNA:   3'- uAGCGGGUUGCcGCuuaa---GCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 46588 0.67 0.924349
Target:  5'- cGUC-CCCGcCGGCGGcg-CGGCG-GCu -3'
miRNA:   3'- -UAGcGGGUuGCCGCUuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 80675 0.67 0.924349
Target:  5'- --gGCCCGGugcCGGCGGucgagcCGGCGuAGCg -3'
miRNA:   3'- uagCGGGUU---GCCGCUuaa---GCCGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 75736 0.67 0.924349
Target:  5'- -gCGCgCGACGGCGAccggGGaCGGGCc -3'
miRNA:   3'- uaGCGgGUUGCCGCUuaagCC-GCUCG- -5'
10922 3' -55.7 NC_002794.1 + 54411 0.67 0.923811
Target:  5'- -gCGCCgGgagcggcGCGGCGuccggacUGGCGAGCa -3'
miRNA:   3'- uaGCGGgU-------UGCCGCuuaa---GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 94378 0.67 0.918871
Target:  5'- -cCGCCCGAaacgcCGGCGGc--CGGUccGAGCg -3'
miRNA:   3'- uaGCGGGUU-----GCCGCUuaaGCCG--CUCG- -5'
10922 3' -55.7 NC_002794.1 + 104643 0.67 0.918871
Target:  5'- -gCGaCgCGACGGCGGA--CGGCGcGGCg -3'
miRNA:   3'- uaGC-GgGUUGCCGCUUaaGCCGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 6025 0.67 0.918871
Target:  5'- -cCGCCaCAGCGGgGuc-UCGGCcgcgGAGCc -3'
miRNA:   3'- uaGCGG-GUUGCCgCuuaAGCCG----CUCG- -5'
10922 3' -55.7 NC_002794.1 + 39876 0.67 0.918871
Target:  5'- uGUCGaaCCGACGaCGAucUCGGaCGAGCg -3'
miRNA:   3'- -UAGCg-GGUUGCcGCUuaAGCC-GCUCG- -5'
10922 3' -55.7 NC_002794.1 + 53645 0.67 0.918871
Target:  5'- --gGCggCAGCGGCGGug-CGGgGAGCg -3'
miRNA:   3'- uagCGg-GUUGCCGCUuaaGCCgCUCG- -5'
10922 3' -55.7 NC_002794.1 + 58233 0.67 0.918871
Target:  5'- -gUGCCC-ACGaCGAcgUCcuGGCGGGCg -3'
miRNA:   3'- uaGCGGGuUGCcGCUuaAG--CCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 176415 0.67 0.918871
Target:  5'- --gGCCCcgagcgggcacgAGCGGCGGcggCGGCGGGa -3'
miRNA:   3'- uagCGGG------------UUGCCGCUuaaGCCGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.