miRNA display CGI


Results 61 - 80 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 3' -55.7 NC_002794.1 + 174397 0.67 0.918311
Target:  5'- cGUCGCCgugacggCAACGGUGGcagCGGCuucgGAGCc -3'
miRNA:   3'- -UAGCGG-------GUUGCCGCUuaaGCCG----CUCG- -5'
10922 3' -55.7 NC_002794.1 + 141968 0.67 0.915474
Target:  5'- cGUCGggacUCCGGCGGCGuccucgucgccgUCGGCG-GCg -3'
miRNA:   3'- -UAGC----GGGUUGCCGCuua---------AGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 6567 0.67 0.915474
Target:  5'- gGUCGCCCAGgaGGUGGucgugcaguucgggcAgcuggUCGGgGGGCa -3'
miRNA:   3'- -UAGCGGGUUg-CCGCU---------------Ua----AGCCgCUCG- -5'
10922 3' -55.7 NC_002794.1 + 154487 0.67 0.913162
Target:  5'- uUCGCgCUcGCGGCGccuccUUCGGCG-GCc -3'
miRNA:   3'- uAGCG-GGuUGCCGCuu---AAGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 113488 0.67 0.913162
Target:  5'- -cCGCCCGacaccgccGCGGCGGAccgCGGCGc-- -3'
miRNA:   3'- uaGCGGGU--------UGCCGCUUaa-GCCGCucg -5'
10922 3' -55.7 NC_002794.1 + 140663 0.67 0.913162
Target:  5'- --gGCCCuaacaccggcGCGGCGGAggccggCGGuCGAGCc -3'
miRNA:   3'- uagCGGGu---------UGCCGCUUaa----GCC-GCUCG- -5'
10922 3' -55.7 NC_002794.1 + 738 0.67 0.913162
Target:  5'- -gCGCCC-GCGGCG----CGcGCGGGCu -3'
miRNA:   3'- uaGCGGGuUGCCGCuuaaGC-CGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 90148 0.67 0.913162
Target:  5'- -cCGCUCGA-GGCGAucgCGGCG-GCc -3'
miRNA:   3'- uaGCGGGUUgCCGCUuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 142021 0.67 0.913162
Target:  5'- --aGCCuCGACgGGCGuc-UCGGCGGGg -3'
miRNA:   3'- uagCGG-GUUG-CCGCuuaAGCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 5930 0.67 0.912579
Target:  5'- cUCGCCCGACGGCcgccgauggacccGGAcggaccgaCGGaCGGGCc -3'
miRNA:   3'- uAGCGGGUUGCCG-------------CUUaa------GCC-GCUCG- -5'
10922 3' -55.7 NC_002794.1 + 100088 0.67 0.907222
Target:  5'- --gGCCgCGACGGCGGccggGGCGAGa -3'
miRNA:   3'- uagCGG-GUUGCCGCUuaagCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 84103 0.67 0.907222
Target:  5'- -gCGCCgcGCGGCGccgUCggGGCGGGCu -3'
miRNA:   3'- uaGCGGguUGCCGCuuaAG--CCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 15172 0.67 0.907222
Target:  5'- -cCGCUCc-CGGCGcc--CGGCGGGCg -3'
miRNA:   3'- uaGCGGGuuGCCGCuuaaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 61476 0.67 0.907222
Target:  5'- uUCGaCC-GCGGCGAuUUCGGCauccGGCg -3'
miRNA:   3'- uAGCgGGuUGCCGCUuAAGCCGc---UCG- -5'
10922 3' -55.7 NC_002794.1 + 10689 0.67 0.907222
Target:  5'- -cCGCCgGcGCGGCGcggUCGGCGcggucGGCg -3'
miRNA:   3'- uaGCGGgU-UGCCGCuuaAGCCGC-----UCG- -5'
10922 3' -55.7 NC_002794.1 + 73942 0.67 0.906615
Target:  5'- cGUCGCCCGccGCGGgGGAagaGGCcgacgcgcugaucGAGCg -3'
miRNA:   3'- -UAGCGGGU--UGCCgCUUaagCCG-------------CUCG- -5'
10922 3' -55.7 NC_002794.1 + 159484 0.67 0.903548
Target:  5'- -gCGCCC-GCGGCGAAgcggUCGacccagaaaucgaccGCGuAGCg -3'
miRNA:   3'- uaGCGGGuUGCCGCUUa---AGC---------------CGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 86344 0.67 0.901053
Target:  5'- -cCGCCCGGCccGCGcucGUUCGGCGucgGGCc -3'
miRNA:   3'- uaGCGGGUUGc-CGCu--UAAGCCGC---UCG- -5'
10922 3' -55.7 NC_002794.1 + 69466 0.67 0.901053
Target:  5'- -cUGCgCGGCGGCGugcgCGGCGGucGCg -3'
miRNA:   3'- uaGCGgGUUGCCGCuuaaGCCGCU--CG- -5'
10922 3' -55.7 NC_002794.1 + 41567 0.67 0.901053
Target:  5'- --gGCUCGACGGuCGAAUcgagccuccUCGGgaGAGCg -3'
miRNA:   3'- uagCGGGUUGCC-GCUUA---------AGCCg-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.