miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 3' -55.7 NC_002794.1 + 738 0.67 0.913162
Target:  5'- -gCGCCC-GCGGCG----CGcGCGGGCu -3'
miRNA:   3'- uaGCGGGuUGCCGCuuaaGC-CGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 922 0.68 0.888039
Target:  5'- --aGCuCCGACGGCGAcgUCGucagcaGCG-GCa -3'
miRNA:   3'- uagCG-GGUUGCCGCUuaAGC------CGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 1597 0.67 0.924349
Target:  5'- cUCGCCCGACGcCGccucgcaCGGCGcGCg -3'
miRNA:   3'- uAGCGGGUUGCcGCuuaa---GCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 2070 0.66 0.952348
Target:  5'- gAUCGCCCGACGaCGc---CGGCGcccGCu -3'
miRNA:   3'- -UAGCGGGUUGCcGCuuaaGCCGCu--CG- -5'
10922 3' -55.7 NC_002794.1 + 2120 0.79 0.329184
Target:  5'- -cCGCCC-GCGGC---UUCGGCGAGCg -3'
miRNA:   3'- uaGCGGGuUGCCGcuuAAGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 2535 0.72 0.657864
Target:  5'- -gCGCCCGAUcgguuccaGGCGG--UCGuGCGAGCa -3'
miRNA:   3'- uaGCGGGUUG--------CCGCUuaAGC-CGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 2862 0.68 0.893352
Target:  5'- cUCGCCCGGCGuGUGcagcgccagCGGCGuGUa -3'
miRNA:   3'- uAGCGGGUUGC-CGCuuaa-----GCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 3999 0.73 0.617497
Target:  5'- gGUCGUgaaaggCCGGCGGCGGAgggggCGGCGgaGGCg -3'
miRNA:   3'- -UAGCG------GGUUGCCGCUUaa---GCCGC--UCG- -5'
10922 3' -55.7 NC_002794.1 + 4188 0.7 0.801893
Target:  5'- -gCGCCggCAGCGGCGg---CGGCGuGCc -3'
miRNA:   3'- uaGCGG--GUUGCCGCuuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 5878 0.67 0.901053
Target:  5'- cUCGCCCGACGGUccguccGggUccaUCGGCccguccGGGUc -3'
miRNA:   3'- uAGCGGGUUGCCG------CuuA---AGCCG------CUCG- -5'
10922 3' -55.7 NC_002794.1 + 5930 0.67 0.912579
Target:  5'- cUCGCCCGACGGCcgccgauggacccGGAcggaccgaCGGaCGGGCc -3'
miRNA:   3'- uAGCGGGUUGCCG-------------CUUaa------GCC-GCUCG- -5'
10922 3' -55.7 NC_002794.1 + 6025 0.67 0.918871
Target:  5'- -cCGCCaCAGCGGgGuc-UCGGCcgcgGAGCc -3'
miRNA:   3'- uaGCGG-GUUGCCgCuuaAGCCG----CUCG- -5'
10922 3' -55.7 NC_002794.1 + 6567 0.67 0.915474
Target:  5'- gGUCGCCCAGgaGGUGGucgugcaguucgggcAgcuggUCGGgGGGCa -3'
miRNA:   3'- -UAGCGGGUUg-CCGCU---------------Ua----AGCCgCUCG- -5'
10922 3' -55.7 NC_002794.1 + 6993 0.66 0.934605
Target:  5'- cGUCGUCCGacagcagcaggaACGGCcagcagUGGCGGGCc -3'
miRNA:   3'- -UAGCGGGU------------UGCCGcuuaa-GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 7616 0.76 0.470949
Target:  5'- cGUCGaCCGGCGGCGGcggcgguagCGGCGGGCc -3'
miRNA:   3'- -UAGCgGGUUGCCGCUuaa------GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 7821 0.71 0.755235
Target:  5'- -cCGuCCCGgacGCGGCGAGUcucgacuUCGGCcAGCg -3'
miRNA:   3'- uaGC-GGGU---UGCCGCUUA-------AGCCGcUCG- -5'
10922 3' -55.7 NC_002794.1 + 8084 0.66 0.933621
Target:  5'- gGUCGCCUcgaccccggaggAACGGCccgcgaagCGaGCGAGCg -3'
miRNA:   3'- -UAGCGGG------------UUGCCGcuuaa---GC-CGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 8403 0.66 0.952348
Target:  5'- -cCGCCgcuCGGCGucgcUCGGCGcGCg -3'
miRNA:   3'- uaGCGGguuGCCGCuua-AGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 10392 0.71 0.746683
Target:  5'- -aCGCCgCgGGCGGCGGccgCGGCGAGg -3'
miRNA:   3'- uaGCGG-G-UUGCCGCUuaaGCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 10689 0.67 0.907222
Target:  5'- -cCGCCgGcGCGGCGcggUCGGCGcggucGGCg -3'
miRNA:   3'- uaGCGGgU-UGCCGCuuaAGCCGC-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.