miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 3' -55.7 NC_002794.1 + 11230 0.69 0.843878
Target:  5'- -gCGUCCAcgauCGGCGucgcgUCGGCG-GCg -3'
miRNA:   3'- uaGCGGGUu---GCCGCuua--AGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 11360 0.66 0.928044
Target:  5'- -aCGCCCgGGCGGCGcgggccccgcgcgCGGCGcgGGCg -3'
miRNA:   3'- uaGCGGG-UUGCCGCuuaa---------GCCGC--UCG- -5'
10922 3' -55.7 NC_002794.1 + 11781 0.68 0.880505
Target:  5'- -gCGCCCAcgguguaGCGGCaGAA--CGGCGAacGCg -3'
miRNA:   3'- uaGCGGGU-------UGCCG-CUUaaGCCGCU--CG- -5'
10922 3' -55.7 NC_002794.1 + 14139 0.68 0.874147
Target:  5'- aAUCGCCCGucucGCGGAacaCGcGCGAGCg -3'
miRNA:   3'- -UAGCGGGUugc-CGCUUaa-GC-CGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 14462 0.66 0.945689
Target:  5'- uUCGCCCGGgccggccgccgccacCGccauguccGCGAAgccgUCGGCGAGg -3'
miRNA:   3'- uAGCGGGUU---------------GC--------CGCUUa---AGCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 14691 0.73 0.637689
Target:  5'- -cCGCgCCGACGGCGAA--CGGCGGa- -3'
miRNA:   3'- uaGCG-GGUUGCCGCUUaaGCCGCUcg -5'
10922 3' -55.7 NC_002794.1 + 15009 0.72 0.674952
Target:  5'- cGUCGUCUAcggccucgucggagGCGGCGGAUcCGGCGcGCc -3'
miRNA:   3'- -UAGCGGGU--------------UGCCGCUUAaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 15114 0.71 0.737088
Target:  5'- -cCGUCCGGCuccucGGCGGcUUCGGCG-GCa -3'
miRNA:   3'- uaGCGGGUUG-----CCGCUuAAGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 15172 0.67 0.907222
Target:  5'- -cCGCUCc-CGGCGcc--CGGCGGGCg -3'
miRNA:   3'- uaGCGGGuuGCCGCuuaaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 15793 0.66 0.938917
Target:  5'- -gCGCUCAgagucaaGCGGCGGAcgguaUCGGUGcGCa -3'
miRNA:   3'- uaGCGGGU-------UGCCGCUUa----AGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 16195 0.72 0.667925
Target:  5'- cUCGCCgGACGGCacccgCGGCG-GCg -3'
miRNA:   3'- uAGCGGgUUGCCGcuuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 16634 0.7 0.793016
Target:  5'- cGUgGCCCAGaugcaacaGGuCGGcgUCGGCGAGa -3'
miRNA:   3'- -UAgCGGGUUg-------CC-GCUuaAGCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 26086 0.68 0.874147
Target:  5'- --aGaCCCugUGGCGA---CGGCGAGCu -3'
miRNA:   3'- uagC-GGGuuGCCGCUuaaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 26413 0.66 0.943934
Target:  5'- gAUUGCUacggugCAACGGUGggUUCGG--GGCg -3'
miRNA:   3'- -UAGCGG------GUUGCCGCuuAAGCCgcUCG- -5'
10922 3' -55.7 NC_002794.1 + 35527 0.66 0.949918
Target:  5'- -gCGCggAugGGCGAcgaauuugaccgCGGCGAGCg -3'
miRNA:   3'- uaGCGggUugCCGCUuaa---------GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 39319 0.68 0.879107
Target:  5'- cGUCGCgUCGGCcGUGGAUUCGGCacgcgccugucugaGAGCg -3'
miRNA:   3'- -UAGCG-GGUUGcCGCUUAAGCCG--------------CUCG- -5'
10922 3' -55.7 NC_002794.1 + 39876 0.67 0.918871
Target:  5'- uGUCGaaCCGACGaCGAucUCGGaCGAGCg -3'
miRNA:   3'- -UAGCg-GGUUGCcGCUuaAGCC-GCUCG- -5'
10922 3' -55.7 NC_002794.1 + 41492 0.71 0.707804
Target:  5'- --gGUCCAggccGCGGCGg---CGGCGGGCa -3'
miRNA:   3'- uagCGGGU----UGCCGCuuaaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 41567 0.67 0.901053
Target:  5'- --gGCUCGACGGuCGAAUcgagccuccUCGGgaGAGCg -3'
miRNA:   3'- uagCGGGUUGCC-GCUUA---------AGCCg-CUCG- -5'
10922 3' -55.7 NC_002794.1 + 43229 0.72 0.667925
Target:  5'- cUCGUCCuggGCGGCGuucgagCGGCGAGa -3'
miRNA:   3'- uAGCGGGu--UGCCGCuuaa--GCCGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.