miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 3' -55.7 NC_002794.1 + 44020 0.68 0.881201
Target:  5'- -aCGCCguuCGGCGAGgcguucaUCGGCGcGCa -3'
miRNA:   3'- uaGCGGguuGCCGCUUa------AGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 44827 0.68 0.87343
Target:  5'- gGUCGCCCGucugaugACgGGCGAGUgcaCGGcCGcGCa -3'
miRNA:   3'- -UAGCGGGU-------UG-CCGCUUAa--GCC-GCuCG- -5'
10922 3' -55.7 NC_002794.1 + 45019 0.66 0.933126
Target:  5'- cGUCaGCuCCAGCGGCGGccgcgucuacgccuAUagcCGGCGcAGCg -3'
miRNA:   3'- -UAG-CG-GGUUGCCGCU--------------UAa--GCCGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 45058 0.73 0.617497
Target:  5'- --gGCCCcGCGGCGGA--CGGcCGAGCc -3'
miRNA:   3'- uagCGGGuUGCCGCUUaaGCC-GCUCG- -5'
10922 3' -55.7 NC_002794.1 + 46588 0.67 0.924349
Target:  5'- cGUC-CCCGcCGGCGGcg-CGGCG-GCu -3'
miRNA:   3'- -UAGcGGGUuGCCGCUuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 48175 0.71 0.727404
Target:  5'- cUCGaggaCCCGGCGGCGAug-CGGCGcacguGCg -3'
miRNA:   3'- uAGC----GGGUUGCCGCUuaaGCCGCu----CG- -5'
10922 3' -55.7 NC_002794.1 + 48874 0.68 0.874147
Target:  5'- gGUCgGCgCCGcCGGcCGAcgUCGGCG-GCg -3'
miRNA:   3'- -UAG-CG-GGUuGCC-GCUuaAGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 49541 0.69 0.839069
Target:  5'- cUCGCCgAcgcGCGGCGGAUUCGaccccgucgucgaucGCG-GCg -3'
miRNA:   3'- uAGCGGgU---UGCCGCUUAAGC---------------CGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 49938 0.68 0.888039
Target:  5'- -gCGCCgAGCGGaGGGgcCGGCGAGa -3'
miRNA:   3'- uaGCGGgUUGCCgCUUaaGCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 49983 0.69 0.827595
Target:  5'- -gCGaCCgGACcGCGAGaagCGGCGAGCg -3'
miRNA:   3'- uaGC-GGgUUGcCGCUUaa-GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 50115 0.71 0.737088
Target:  5'- -gCGCCggcauCGACGGCGAcccCGaGCGAGCg -3'
miRNA:   3'- uaGCGG-----GUUGCCGCUuaaGC-CGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 50666 0.68 0.874147
Target:  5'- gGUCGCCgCGGCGGCccuc-CGGC-AGCg -3'
miRNA:   3'- -UAGCGG-GUUGCCGcuuaaGCCGcUCG- -5'
10922 3' -55.7 NC_002794.1 + 50889 0.66 0.939385
Target:  5'- -gCGCCuCGACGGUGucgcgacCGGCGccgGGCg -3'
miRNA:   3'- uaGCGG-GUUGCCGCuuaa---GCCGC---UCG- -5'
10922 3' -55.7 NC_002794.1 + 52156 0.71 0.756181
Target:  5'- cGUUGCCC-ACcGCGGGcccCGGCGGGCg -3'
miRNA:   3'- -UAGCGGGuUGcCGCUUaa-GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 53507 0.66 0.952348
Target:  5'- --gGCggaGGCGGCGGAggCGGCGgaGGCg -3'
miRNA:   3'- uagCGgg-UUGCCGCUUaaGCCGC--UCG- -5'
10922 3' -55.7 NC_002794.1 + 53533 0.7 0.783998
Target:  5'- -gCGCa-GGCGGCGGAggCGGCGgaGGCg -3'
miRNA:   3'- uaGCGggUUGCCGCUUaaGCCGC--UCG- -5'
10922 3' -55.7 NC_002794.1 + 53645 0.67 0.918871
Target:  5'- --gGCggCAGCGGCGGug-CGGgGAGCg -3'
miRNA:   3'- uagCGg-GUUGCCGCUuaaGCCgCUCG- -5'
10922 3' -55.7 NC_002794.1 + 53720 0.73 0.627592
Target:  5'- -cCGCCgGgucACGGCGGAggCGGCGguAGCa -3'
miRNA:   3'- uaGCGGgU---UGCCGCUUaaGCCGC--UCG- -5'
10922 3' -55.7 NC_002794.1 + 54018 0.66 0.929593
Target:  5'- gAUCGCUCGGCGGUuggaaGAgcgAUUCGGUGGu- -3'
miRNA:   3'- -UAGCGGGUUGCCG-----CU---UAAGCCGCUcg -5'
10922 3' -55.7 NC_002794.1 + 54261 0.72 0.677959
Target:  5'- cGUCGCCgGGCGGC----UCGGCGAccgGCu -3'
miRNA:   3'- -UAGCGGgUUGCCGcuuaAGCCGCU---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.