miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 3' -55.7 NC_002794.1 + 195005 0.74 0.576299
Target:  5'- uUCgGCCCAGCGcgcgcccGCGAGgcggUCGGCGuGCg -3'
miRNA:   3'- uAG-CGGGUUGC-------CGCUUa---AGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 183934 0.66 0.929593
Target:  5'- -aCGgCCA-CGGUGAucgcgaucgCGGUGAGCg -3'
miRNA:   3'- uaGCgGGUuGCCGCUuaa------GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 183655 0.71 0.707804
Target:  5'- -cCGCUCGGacgugcCGGCGGcgUCGGCG-GCg -3'
miRNA:   3'- uaGCGGGUU------GCCGCUuaAGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 181804 0.7 0.783998
Target:  5'- -aCG-CCGACGGCGAuccUGGCgGAGCg -3'
miRNA:   3'- uaGCgGGUUGCCGCUuaaGCCG-CUCG- -5'
10922 3' -55.7 NC_002794.1 + 181312 0.72 0.657864
Target:  5'- cUCGCCCccgucGACGcGCGGGa--GGCGAGCc -3'
miRNA:   3'- uAGCGGG-----UUGC-CGCUUaagCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 180655 0.69 0.851742
Target:  5'- -cCGCCCGcgaugGCGGCGucccccgUCcGCGGGCu -3'
miRNA:   3'- uaGCGGGU-----UGCCGCuua----AGcCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 179656 0.68 0.888039
Target:  5'- -cCGCCUGggcACGGuCGAGgucCGGCGGGUc -3'
miRNA:   3'- uaGCGGGU---UGCC-GCUUaa-GCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 178745 0.72 0.687955
Target:  5'- gAUCGCCUuuccGACGGuCGAAgcCGGCGAaacgGCg -3'
miRNA:   3'- -UAGCGGG----UUGCC-GCUUaaGCCGCU----CG- -5'
10922 3' -55.7 NC_002794.1 + 177875 0.71 0.756181
Target:  5'- -gCGCCC-ACGGCcgc--CGGCGAGUa -3'
miRNA:   3'- uaGCGGGuUGCCGcuuaaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 177052 0.66 0.952348
Target:  5'- -cCGgCCAAcggguCGGCGAccUCGGCcGGCg -3'
miRNA:   3'- uaGCgGGUU-----GCCGCUuaAGCCGcUCG- -5'
10922 3' -55.7 NC_002794.1 + 176415 0.67 0.918871
Target:  5'- --gGCCCcgagcgggcacgAGCGGCGGcggCGGCGGGa -3'
miRNA:   3'- uagCGGG------------UUGCCGCUuaaGCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 176373 0.73 0.637689
Target:  5'- gGUCGCCCGcaccgacgACGGCGGAggUCGcGCcgcucgGAGCg -3'
miRNA:   3'- -UAGCGGGU--------UGCCGCUUa-AGC-CG------CUCG- -5'
10922 3' -55.7 NC_002794.1 + 174397 0.67 0.918311
Target:  5'- cGUCGCCgugacggCAACGGUGGcagCGGCuucgGAGCc -3'
miRNA:   3'- -UAGCGG-------GUUGCCGCUuaaGCCG----CUCG- -5'
10922 3' -55.7 NC_002794.1 + 171893 0.66 0.948254
Target:  5'- -cCGagCCAGCGGCGAGgcCGGCGc-- -3'
miRNA:   3'- uaGCg-GGUUGCCGCUUaaGCCGCucg -5'
10922 3' -55.7 NC_002794.1 + 171847 0.66 0.952348
Target:  5'- -cCGCCguCAccGCGGCGcc-UCGGCGAcgGCg -3'
miRNA:   3'- uaGCGG--GU--UGCCGCuuaAGCCGCU--CG- -5'
10922 3' -55.7 NC_002794.1 + 169218 0.68 0.888039
Target:  5'- -gCGCaCCcgGACGGCGGccggcucgUCGGCGGGg -3'
miRNA:   3'- uaGCG-GG--UUGCCGCUua------AGCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 166653 0.68 0.859412
Target:  5'- -cCGUCCGGCGGuCGGcggccgUCGGCcgccGAGCa -3'
miRNA:   3'- uaGCGGGUUGCC-GCUua----AGCCG----CUCG- -5'
10922 3' -55.7 NC_002794.1 + 163597 0.79 0.321893
Target:  5'- -gCGCUCGACGGcCGGccgaUCGGCGAGCg -3'
miRNA:   3'- uaGCGGGUUGCC-GCUua--AGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 162990 0.66 0.943934
Target:  5'- -cCGgCgGGCGGCGGcggCGGCG-GCg -3'
miRNA:   3'- uaGCgGgUUGCCGCUuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 162112 0.66 0.939385
Target:  5'- -aCG-CCggUGGCGcaccuGUaCGGCGAGCu -3'
miRNA:   3'- uaGCgGGuuGCCGCu----UAaGCCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.