miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 3' -55.7 NC_002794.1 + 159484 0.67 0.903548
Target:  5'- -gCGCCC-GCGGCGAAgcggUCGacccagaaaucgaccGCGuAGCg -3'
miRNA:   3'- uaGCGGGuUGCCGCUUa---AGC---------------CGC-UCG- -5'
10922 3' -55.7 NC_002794.1 + 158908 0.67 0.925947
Target:  5'- cGUCGCgCGGCGGCaggcagucgcgcagGAGgaucgcgcgcaggUCGGCGAGg -3'
miRNA:   3'- -UAGCGgGUUGCCG--------------CUUa------------AGCCGCUCg -5'
10922 3' -55.7 NC_002794.1 + 158601 0.68 0.866882
Target:  5'- cUCGCUCuccguCGGCGGg--CGcGCGGGCg -3'
miRNA:   3'- uAGCGGGuu---GCCGCUuaaGC-CGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 158119 0.7 0.774847
Target:  5'- -gCGCcgCCGGCGGCGGcg-CGGCG-GCg -3'
miRNA:   3'- uaGCG--GGUUGCCGCUuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 158046 0.66 0.948254
Target:  5'- gGUCGCUCccgccgucACGGCGA---CGGCG-GCu -3'
miRNA:   3'- -UAGCGGGu-------UGCCGCUuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 157984 0.68 0.894658
Target:  5'- -gCGUCUcgGGCGGCGGGggCGGUG-GCg -3'
miRNA:   3'- uaGCGGG--UUGCCGCUUaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 157918 0.71 0.707804
Target:  5'- -cCGCCCGugccuCGGCGAcucgcUCGGCG-GCu -3'
miRNA:   3'- uaGCGGGUu----GCCGCUua---AGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 157385 0.71 0.756181
Target:  5'- -gCGCCCuuuAugGGCGGAggaagcgCGGCG-GCg -3'
miRNA:   3'- uaGCGGG---UugCCGCUUaa-----GCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 155244 0.67 0.901053
Target:  5'- -gCGUCCGACuccGCGGAgUCcGCGAGCg -3'
miRNA:   3'- uaGCGGGUUGc--CGCUUaAGcCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 154487 0.67 0.913162
Target:  5'- uUCGCgCUcGCGGCGccuccUUCGGCG-GCc -3'
miRNA:   3'- uAGCG-GGuUGCCGCuu---AAGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 152908 0.73 0.647783
Target:  5'- uGUCGCCCAgcACGGCGugGAUguaGGCcAGCu -3'
miRNA:   3'- -UAGCGGGU--UGCCGC--UUAag-CCGcUCG- -5'
10922 3' -55.7 NC_002794.1 + 151568 0.72 0.687955
Target:  5'- -gCGCCCGccgggcCGGCGAgg-CGGgGAGCg -3'
miRNA:   3'- uaGCGGGUu-----GCCGCUuaaGCCgCUCG- -5'
10922 3' -55.7 NC_002794.1 + 151532 0.7 0.801893
Target:  5'- --aGCgCGGCGGCGAAgaagaCGGCGccGGCg -3'
miRNA:   3'- uagCGgGUUGCCGCUUaa---GCCGC--UCG- -5'
10922 3' -55.7 NC_002794.1 + 151156 0.8 0.293941
Target:  5'- -cCGCCCGgccgcgaccGCGGCGAcgUCGGCcGGCg -3'
miRNA:   3'- uaGCGGGU---------UGCCGCUuaAGCCGcUCG- -5'
10922 3' -55.7 NC_002794.1 + 149085 0.7 0.765571
Target:  5'- uUCGacCCCAGCGGCGg---CGGCGAcaaaaGCa -3'
miRNA:   3'- uAGC--GGGUUGCCGCuuaaGCCGCU-----CG- -5'
10922 3' -55.7 NC_002794.1 + 146926 0.68 0.894658
Target:  5'- -gCGCCaggcgcuCGGCGAccucuucgcAgaCGGCGAGCa -3'
miRNA:   3'- uaGCGGguu----GCCGCU---------UaaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 146458 0.7 0.765571
Target:  5'- cGUCGgCC-ACGGCGGccgCGGCG-GCg -3'
miRNA:   3'- -UAGCgGGuUGCCGCUuaaGCCGCuCG- -5'
10922 3' -55.7 NC_002794.1 + 146350 0.66 0.939385
Target:  5'- cGUCGCUCGcCGGguacaUGggUUCGcgcgccGCGAGCa -3'
miRNA:   3'- -UAGCGGGUuGCC-----GCuuAAGC------CGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 146263 0.69 0.827595
Target:  5'- gAUCGCgau-CGGCGA---CGGCGGGCg -3'
miRNA:   3'- -UAGCGgguuGCCGCUuaaGCCGCUCG- -5'
10922 3' -55.7 NC_002794.1 + 145099 0.68 0.858654
Target:  5'- -cCGCCCcgGGCGGCGGcgaCGGCGcgucucgGGCg -3'
miRNA:   3'- uaGCGGG--UUGCCGCUuaaGCCGC-------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.