Results 41 - 60 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10922 | 3' | -55.7 | NC_002794.1 | + | 177052 | 0.66 | 0.952348 |
Target: 5'- -cCGgCCAAcggguCGGCGAccUCGGCcGGCg -3' miRNA: 3'- uaGCgGGUU-----GCCGCUuaAGCCGcUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 131931 | 0.66 | 0.952348 |
Target: 5'- -cCGCCCGGcCGGCGAGUcUCGagucCGAcGCc -3' miRNA: 3'- uaGCGGGUU-GCCGCUUA-AGCc---GCU-CG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 113702 | 0.66 | 0.952348 |
Target: 5'- --gGCCCGACGGCuc---CGGCgcccGAGCc -3' miRNA: 3'- uagCGGGUUGCCGcuuaaGCCG----CUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 2070 | 0.66 | 0.952348 |
Target: 5'- gAUCGCCCGACGaCGc---CGGCGcccGCu -3' miRNA: 3'- -UAGCGGGUUGCcGCuuaaGCCGCu--CG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 171847 | 0.66 | 0.952348 |
Target: 5'- -cCGCCguCAccGCGGCGcc-UCGGCGAcgGCg -3' miRNA: 3'- uaGCGG--GU--UGCCGCuuaAGCCGCU--CG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 75820 | 0.66 | 0.943934 |
Target: 5'- cGUCGUCaUGACGGCGGcggUGGCGGccGCg -3' miRNA: 3'- -UAGCGG-GUUGCCGCUuaaGCCGCU--CG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 26413 | 0.66 | 0.943934 |
Target: 5'- gAUUGCUacggugCAACGGUGggUUCGG--GGCg -3' miRNA: 3'- -UAGCGG------GUUGCCGCuuAAGCCgcUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 50889 | 0.66 | 0.939385 |
Target: 5'- -gCGCCuCGACGGUGucgcgacCGGCGccgGGCg -3' miRNA: 3'- uaGCGG-GUUGCCGCuuaa---GCCGC---UCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 83053 | 0.66 | 0.939385 |
Target: 5'- -cCGCCCAGCGcaGCGucugcUCGGCcgccGAGUa -3' miRNA: 3'- uaGCGGGUUGC--CGCuua--AGCCG----CUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 162112 | 0.66 | 0.939385 |
Target: 5'- -aCG-CCggUGGCGcaccuGUaCGGCGAGCu -3' miRNA: 3'- uaGCgGGuuGCCGCu----UAaGCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 94593 | 0.66 | 0.939385 |
Target: 5'- -cCGCCCc-CGGCGccGGUggcggCGGCGGGg -3' miRNA: 3'- uaGCGGGuuGCCGC--UUAa----GCCGCUCg -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 62870 | 0.66 | 0.939385 |
Target: 5'- gGUCGCCgAGCguacguuaucGGCGAuuacgacgUCGGCGAu- -3' miRNA: 3'- -UAGCGGgUUG----------CCGCUua------AGCCGCUcg -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 87985 | 0.66 | 0.939385 |
Target: 5'- cAUCGCggaGGCGGCG----CGGCGGGUg -3' miRNA: 3'- -UAGCGgg-UUGCCGCuuaaGCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 146350 | 0.66 | 0.939385 |
Target: 5'- cGUCGCUCGcCGGguacaUGggUUCGcgcgccGCGAGCa -3' miRNA: 3'- -UAGCGGGUuGCC-----GCuuAAGC------CGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 100032 | 0.66 | 0.943934 |
Target: 5'- --gGCCgggggagcggCGGCGGCGGccggggaggCGGCGGGCg -3' miRNA: 3'- uagCGG----------GUUGCCGCUuaa------GCCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 126925 | 0.66 | 0.942593 |
Target: 5'- cGUCGCCCGcgggccGCGGCGccggCGccucucccuccuccGCGGGCc -3' miRNA: 3'- -UAGCGGGU------UGCCGCuuaaGC--------------CGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 72081 | 0.66 | 0.943934 |
Target: 5'- -aCGCCUccguguuggaGGCGGUGGcgccGUUCGG-GGGCg -3' miRNA: 3'- uaGCGGG----------UUGCCGCU----UAAGCCgCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 162990 | 0.66 | 0.943934 |
Target: 5'- -cCGgCgGGCGGCGGcggCGGCG-GCg -3' miRNA: 3'- uaGCgGgUUGCCGCUuaaGCCGCuCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 103544 | 0.66 | 0.943934 |
Target: 5'- --gGCgCgGGCGGCGGGggcccgGGCGGGCg -3' miRNA: 3'- uagCG-GgUUGCCGCUUaag---CCGCUCG- -5' |
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10922 | 3' | -55.7 | NC_002794.1 | + | 106935 | 0.66 | 0.943934 |
Target: 5'- -aUGCCCGcgguGCGGCGA---UGGCGcGGUg -3' miRNA: 3'- uaGCGGGU----UGCCGCUuaaGCCGC-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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