miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10922 5' -48.4 NC_002794.1 + 117879 0.66 0.999908
Target:  5'- cCU-CCGccUCGGAacggCGGGCGUUGUUCc -3'
miRNA:   3'- -GAuGGCa-AGCUUg---GUCCGCAAUAAGc -5'
10922 5' -48.4 NC_002794.1 + 39904 0.66 0.999881
Target:  5'- -cGCCGUccccacacgagUCGAA-CGGGCGUg--UCGa -3'
miRNA:   3'- gaUGGCA-----------AGCUUgGUCCGCAauaAGC- -5'
10922 5' -48.4 NC_002794.1 + 39801 0.66 0.999846
Target:  5'- -aGCCGUgUCGAAUagagCGGGCGUUGg--- -3'
miRNA:   3'- gaUGGCA-AGCUUG----GUCCGCAAUaagc -5'
10922 5' -48.4 NC_002794.1 + 180683 0.66 0.999803
Target:  5'- -gGCCGUUCGccggaGACCGGGUGa------ -3'
miRNA:   3'- gaUGGCAAGC-----UUGGUCCGCaauaagc -5'
10922 5' -48.4 NC_002794.1 + 63272 0.66 0.999803
Target:  5'- -gGCCGcUUC--ACCGGGCGUgacgugGUUCa -3'
miRNA:   3'- gaUGGC-AAGcuUGGUCCGCAa-----UAAGc -5'
10922 5' -48.4 NC_002794.1 + 152203 0.66 0.999749
Target:  5'- -cGCCGaaCGAGCCGGGCuc---UCGg -3'
miRNA:   3'- gaUGGCaaGCUUGGUCCGcaauaAGC- -5'
10922 5' -48.4 NC_002794.1 + 104595 0.67 0.999603
Target:  5'- -cGCCGUUCGugGACCGGcGCGgccugUAcgugUCGg -3'
miRNA:   3'- gaUGGCAAGC--UUGGUC-CGCa----AUa---AGC- -5'
10922 5' -48.4 NC_002794.1 + 138045 0.67 0.999505
Target:  5'- cCUGCCGcUCGAcgGCCAGGCc------- -3'
miRNA:   3'- -GAUGGCaAGCU--UGGUCCGcaauaagc -5'
10922 5' -48.4 NC_002794.1 + 65428 0.67 0.999386
Target:  5'- -gGCCGUcUGGuCCAGGCGUccgUGUUgGg -3'
miRNA:   3'- gaUGGCAaGCUuGGUCCGCA---AUAAgC- -5'
10922 5' -48.4 NC_002794.1 + 87810 0.67 0.999229
Target:  5'- gUGCCGUUCGugaaccacACCAgcucgccgugccuGGCGUUGUUaCGc -3'
miRNA:   3'- gAUGGCAAGCu-------UGGU-------------CCGCAAUAA-GC- -5'
10922 5' -48.4 NC_002794.1 + 73176 0.68 0.998636
Target:  5'- gUGCCGgUCGcgccagcGCCGGGCGacGUUCGu -3'
miRNA:   3'- gAUGGCaAGCu------UGGUCCGCaaUAAGC- -5'
10922 5' -48.4 NC_002794.1 + 63398 0.68 0.998636
Target:  5'- uCUACUGUg-GAACCGGGUGUcgucucagUcgUCGa -3'
miRNA:   3'- -GAUGGCAagCUUGGUCCGCA--------AuaAGC- -5'
10922 5' -48.4 NC_002794.1 + 87021 0.69 0.997656
Target:  5'- gCUuCCGagCGAACCGGGUGUg--UUGg -3'
miRNA:   3'- -GAuGGCaaGCUUGGUCCGCAauaAGC- -5'
10922 5' -48.4 NC_002794.1 + 80669 0.69 0.997656
Target:  5'- gUGCCGgcggUCGAGCC-GGCGUa----- -3'
miRNA:   3'- gAUGGCa---AGCUUGGuCCGCAauaagc -5'
10922 5' -48.4 NC_002794.1 + 148439 0.69 0.99722
Target:  5'- -cGCCGUcgcgCGGagcGCCAGGCGU--UUCa -3'
miRNA:   3'- gaUGGCAa---GCU---UGGUCCGCAauAAGc -5'
10922 5' -48.4 NC_002794.1 + 151620 0.69 0.99722
Target:  5'- gUGCCGggCGGcucgguGCCGGGCGgc--UCGg -3'
miRNA:   3'- gAUGGCaaGCU------UGGUCCGCaauaAGC- -5'
10922 5' -48.4 NC_002794.1 + 127592 0.69 0.997077
Target:  5'- -aGCUGUUCGAcgagcaccgggccaGCCGGGCGUa----- -3'
miRNA:   3'- gaUGGCAAGCU--------------UGGUCCGCAauaagc -5'
10922 5' -48.4 NC_002794.1 + 48026 0.69 0.996719
Target:  5'- uUGCCGguggUCGAGCCguugugcauccuGGGCGUcg-UCGc -3'
miRNA:   3'- gAUGGCa---AGCUUGG------------UCCGCAauaAGC- -5'
10922 5' -48.4 NC_002794.1 + 63760 0.7 0.993915
Target:  5'- -cGCCGUUCGAguGCCAuGGgGUggacggUCGg -3'
miRNA:   3'- gaUGGCAAGCU--UGGU-CCgCAaua---AGC- -5'
10922 5' -48.4 NC_002794.1 + 82119 0.7 0.993552
Target:  5'- -cACCGacCGGACCAGGCGcgcgagggugUCGg -3'
miRNA:   3'- gaUGGCaaGCUUGGUCCGCaaua------AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.