miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10923 3' -59.8 NC_002794.1 + 162998 0.66 0.83785
Target:  5'- cGGccgaGCCgGCggGCGGCGGCGGcGgCg -3'
miRNA:   3'- aCCaug-CGGaCGa-UGCCGCUGCC-CgG- -5'
10923 3' -59.8 NC_002794.1 + 182590 0.66 0.83785
Target:  5'- gUGGUggaGCgGCC-GCUguugACGGCGGCauGGGCg -3'
miRNA:   3'- -ACCA---UG-CGGaCGA----UGCCGCUG--CCCGg -5'
10923 3' -59.8 NC_002794.1 + 193770 0.66 0.83785
Target:  5'- -----gGCCUuaUACGGCGACcgGGGCg -3'
miRNA:   3'- accaugCGGAcgAUGCCGCUG--CCCGg -5'
10923 3' -59.8 NC_002794.1 + 113820 0.66 0.83785
Target:  5'- cGcGUGgGCg-GCgGCGGCGGCGGcGUCg -3'
miRNA:   3'- aC-CAUgCGgaCGaUGCCGCUGCC-CGG- -5'
10923 3' -59.8 NC_002794.1 + 120231 0.66 0.83785
Target:  5'- cUGGUAC-CCUuucucGCUacacacgaGCGGCaGCGGcGCCg -3'
miRNA:   3'- -ACCAUGcGGA-----CGA--------UGCCGcUGCC-CGG- -5'
10923 3' -59.8 NC_002794.1 + 77225 0.66 0.83785
Target:  5'- cUGcUGCGCCaGCU-CGGCGGCcagcucguccguGGGCg -3'
miRNA:   3'- -ACcAUGCGGaCGAuGCCGCUG------------CCCGg -5'
10923 3' -59.8 NC_002794.1 + 108589 0.66 0.83785
Target:  5'- gGGUGCagGCCggGCgggugGgGGUGgggaaGCGGGCCu -3'
miRNA:   3'- aCCAUG--CGGa-CGa----UgCCGC-----UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 88645 0.66 0.83785
Target:  5'- cGGcgcCGCCggGCgGCGcGCGACGGGg- -3'
miRNA:   3'- aCCau-GCGGa-CGaUGC-CGCUGCCCgg -5'
10923 3' -59.8 NC_002794.1 + 102027 0.66 0.834702
Target:  5'- cGGccauCGCCgagaucauggacgGCcGCGGCGGCGaGCCg -3'
miRNA:   3'- aCCau--GCGGa------------CGaUGCCGCUGCcCGG- -5'
10923 3' -59.8 NC_002794.1 + 95925 0.66 0.82993
Target:  5'- gUGGUcuuGCGgCUGUU-CGGCcggaccgccGACGGcGCCa -3'
miRNA:   3'- -ACCA---UGCgGACGAuGCCG---------CUGCC-CGG- -5'
10923 3' -59.8 NC_002794.1 + 45465 0.66 0.82993
Target:  5'- cGG-GCGCCcugGUUGCGGCaGAagcCGuGGCCc -3'
miRNA:   3'- aCCaUGCGGa--CGAUGCCG-CU---GC-CCGG- -5'
10923 3' -59.8 NC_002794.1 + 157743 0.66 0.82993
Target:  5'- cGGgagagccGCGCCaGCUGgGGCGugGaGUCg -3'
miRNA:   3'- aCCa------UGCGGaCGAUgCCGCugCcCGG- -5'
10923 3' -59.8 NC_002794.1 + 72976 0.66 0.82993
Target:  5'- --cUGCGCCgaGCUcaACGaGCGcACGGGCg -3'
miRNA:   3'- accAUGCGGa-CGA--UGC-CGC-UGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 137151 0.66 0.821847
Target:  5'- cUGGUGCGCUUcCUGCaccGCGucucgcgccucaGCGGGCUc -3'
miRNA:   3'- -ACCAUGCGGAcGAUGc--CGC------------UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 112223 0.66 0.821847
Target:  5'- ---cACGCCUaccGCUGCGGCG-CGGucaCCg -3'
miRNA:   3'- accaUGCGGA---CGAUGCCGCuGCCc--GG- -5'
10923 3' -59.8 NC_002794.1 + 53377 0.66 0.821847
Target:  5'- gUGG-ACGCgUGCggcgccgGCaGCGACGuGGCg -3'
miRNA:   3'- -ACCaUGCGgACGa------UGcCGCUGC-CCGg -5'
10923 3' -59.8 NC_002794.1 + 95413 0.66 0.821847
Target:  5'- ----gUGUCUGa-GCGGCGGCGGcGCCu -3'
miRNA:   3'- accauGCGGACgaUGCCGCUGCC-CGG- -5'
10923 3' -59.8 NC_002794.1 + 141009 0.66 0.821847
Target:  5'- ---aACGCCcGUaggcCGGCG-CGGGCCg -3'
miRNA:   3'- accaUGCGGaCGau--GCCGCuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 11408 0.66 0.821847
Target:  5'- ---cGCGCC-GCUGCcGCccGCGGGCCg -3'
miRNA:   3'- accaUGCGGaCGAUGcCGc-UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 91380 0.66 0.821847
Target:  5'- aGG-AUGCggGCggccACGGCGGcCGGGUCg -3'
miRNA:   3'- aCCaUGCGgaCGa---UGCCGCU-GCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.