miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10923 3' -59.8 NC_002794.1 + 101862 0.85 0.078108
Target:  5'- cGG-ACGCCgGCgcCGGCGGCGGGCCg -3'
miRNA:   3'- aCCaUGCGGaCGauGCCGCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 137232 0.85 0.082189
Target:  5'- cUGGUGCGCCUgaucgccacgcaGCUG-GGCGACGGGCUg -3'
miRNA:   3'- -ACCAUGCGGA------------CGAUgCCGCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 92056 0.83 0.111268
Target:  5'- aGGUGCGCCUGCgACGGCGGC--GCCg -3'
miRNA:   3'- aCCAUGCGGACGaUGCCGCUGccCGG- -5'
10923 3' -59.8 NC_002794.1 + 101656 0.83 0.114085
Target:  5'- cGGuUGCGCUUGUgacggugGCGGCGACGGGCg -3'
miRNA:   3'- aCC-AUGCGGACGa------UGCCGCUGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 78486 0.81 0.142596
Target:  5'- cGGgcCGCCUGCacggucGCGGCGaaGCGGGCCu -3'
miRNA:   3'- aCCauGCGGACGa-----UGCCGC--UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 131745 0.79 0.181802
Target:  5'- cGGcGCGUCUGCacGCGGuCGACGGGCUg -3'
miRNA:   3'- aCCaUGCGGACGa-UGCC-GCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 74888 0.78 0.20968
Target:  5'- cGGcccgGCCUGCgaguucguguaGCGGCGGCGGGCCa -3'
miRNA:   3'- aCCaug-CGGACGa----------UGCCGCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 72885 0.78 0.214167
Target:  5'- gGGUggcuguacgcGCGCCUGgUGCGGgccgugcUGACGGGCCg -3'
miRNA:   3'- aCCA----------UGCGGACgAUGCC-------GCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 56920 0.78 0.234026
Target:  5'- cGGUGCGCCcccaccguggcgUGCUgcgacGCGGCGgacggguuggccugGCGGGCCu -3'
miRNA:   3'- aCCAUGCGG------------ACGA-----UGCCGC--------------UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 59542 0.77 0.252507
Target:  5'- cGGaGCGCCcgcaGCUcuucuCGGUGGCGGGCCa -3'
miRNA:   3'- aCCaUGCGGa---CGAu----GCCGCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 57190 0.76 0.276499
Target:  5'- cGGaUugGUCUGCgu-GGCGGCGGGUCg -3'
miRNA:   3'- aCC-AugCGGACGaugCCGCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 4195 0.76 0.289163
Target:  5'- gGGgacgGCGCCgGCaGCGGCGGCGGcguGCCc -3'
miRNA:   3'- aCCa---UGCGGaCGaUGCCGCUGCC---CGG- -5'
10923 3' -59.8 NC_002794.1 + 84545 0.76 0.289163
Target:  5'- cGGagACGCCggGCcaGCGGCG-CGGGCCg -3'
miRNA:   3'- aCCa-UGCGGa-CGa-UGCCGCuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 147510 0.76 0.295664
Target:  5'- gUGGUACGCCUGCU-CcGCGACcaGCCg -3'
miRNA:   3'- -ACCAUGCGGACGAuGcCGCUGccCGG- -5'
10923 3' -59.8 NC_002794.1 + 133789 0.76 0.309005
Target:  5'- cGGcgACGCCggcgGCgacgACGGCGACGcGGCg -3'
miRNA:   3'- aCCa-UGCGGa---CGa---UGCCGCUGC-CCGg -5'
10923 3' -59.8 NC_002794.1 + 41493 0.75 0.315846
Target:  5'- cGGUccAgGCC-GCgGCGGCGGCGGGCa -3'
miRNA:   3'- aCCA--UgCGGaCGaUGCCGCUGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 6808 0.75 0.329868
Target:  5'- gGGcUGCGCgUcGCgUACGGCGucuCGGGCCg -3'
miRNA:   3'- aCC-AUGCGgA-CG-AUGCCGCu--GCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 46143 0.74 0.358515
Target:  5'- gUGGgcCGCCUgccucGCUACGGCGugccgguggagcgGCGGGaCCg -3'
miRNA:   3'- -ACCauGCGGA-----CGAUGCCGC-------------UGCCC-GG- -5'
10923 3' -59.8 NC_002794.1 + 158124 0.74 0.374646
Target:  5'- cGGcgGCGCCgccgGCgGCGGCGcgGCGGcGCCg -3'
miRNA:   3'- aCCa-UGCGGa---CGaUGCCGC--UGCC-CGG- -5'
10923 3' -59.8 NC_002794.1 + 88694 0.74 0.382498
Target:  5'- aGGgcCGCC-GCUAC-GCGGCGGaGCCg -3'
miRNA:   3'- aCCauGCGGaCGAUGcCGCUGCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.