miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10923 3' -59.8 NC_002794.1 + 79942 0.74 0.390459
Target:  5'- gGGUGgaCUUGgcGCGGCGGCGGGCCg -3'
miRNA:   3'- aCCAUgcGGACgaUGCCGCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 130738 0.74 0.390459
Target:  5'- aGGUcgcGCGCCUGUccgagcuccuCGGCGACuGGGUCg -3'
miRNA:   3'- aCCA---UGCGGACGau--------GCCGCUG-CCCGG- -5'
10923 3' -59.8 NC_002794.1 + 81936 0.74 0.398528
Target:  5'- aGGUcgGCC-GCcgaGGCGACGGGCCg -3'
miRNA:   3'- aCCAugCGGaCGaugCCGCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 48875 0.74 0.398528
Target:  5'- aGGUcgGCGCCgccgGCcgacgucgGCGGCGGCGGccGCCg -3'
miRNA:   3'- aCCA--UGCGGa---CGa-------UGCCGCUGCC--CGG- -5'
10923 3' -59.8 NC_002794.1 + 134918 0.73 0.406702
Target:  5'- cGGccugcacCGCCUGCUcgACGaGCGcCGGGCCu -3'
miRNA:   3'- aCCau-----GCGGACGA--UGC-CGCuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 11300 0.73 0.406702
Target:  5'- cGG-ACGCCUcacgcgccGCcGCGGCGGCGGcgGCCa -3'
miRNA:   3'- aCCaUGCGGA--------CGaUGCCGCUGCC--CGG- -5'
10923 3' -59.8 NC_002794.1 + 68508 0.73 0.423363
Target:  5'- ---gACGCUcGCgGCGGCGGCGcGGCCg -3'
miRNA:   3'- accaUGCGGaCGaUGCCGCUGC-CCGG- -5'
10923 3' -59.8 NC_002794.1 + 181173 0.73 0.423363
Target:  5'- cGGU-CGCgCUGCUccugACGGCGugGGGa- -3'
miRNA:   3'- aCCAuGCG-GACGA----UGCCGCugCCCgg -5'
10923 3' -59.8 NC_002794.1 + 58263 0.73 0.431845
Target:  5'- gGGgagcCGCCgccgGCggucGCGGCGGCGGuGCCc -3'
miRNA:   3'- aCCau--GCGGa---CGa---UGCCGCUGCC-CGG- -5'
10923 3' -59.8 NC_002794.1 + 157454 0.73 0.440426
Target:  5'- cGGUcacccggcgaGCGCUcGCcgacuccAUGGCGGCGGGCCg -3'
miRNA:   3'- aCCA----------UGCGGaCGa------UGCCGCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 135358 0.73 0.440426
Target:  5'- -aGUACGUCUGCgucgACGGCacgGAgGGGCUg -3'
miRNA:   3'- acCAUGCGGACGa---UGCCG---CUgCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 148532 0.73 0.449103
Target:  5'- gGGUGC-CCgGCUcccGCGGCGGC-GGCCu -3'
miRNA:   3'- aCCAUGcGGaCGA---UGCCGCUGcCCGG- -5'
10923 3' -59.8 NC_002794.1 + 15995 0.72 0.457873
Target:  5'- gGGU-CGCCgGuCUGucCGGCGACGGGUa -3'
miRNA:   3'- aCCAuGCGGaC-GAU--GCCGCUGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 75348 0.72 0.457873
Target:  5'- gUGGgcaGCCUGCagGCGGUGGCccccGGGCUg -3'
miRNA:   3'- -ACCaugCGGACGa-UGCCGCUG----CCCGG- -5'
10923 3' -59.8 NC_002794.1 + 79741 0.72 0.457873
Target:  5'- aGGUcgagucCGCCgcgGCgGCGGCGGCGGcgGCCa -3'
miRNA:   3'- aCCAu-----GCGGa--CGaUGCCGCUGCC--CGG- -5'
10923 3' -59.8 NC_002794.1 + 89518 0.72 0.466735
Target:  5'- cGGUuCGCCggGUcgACGGCgGGCGGGCg -3'
miRNA:   3'- aCCAuGCGGa-CGa-UGCCG-CUGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 11363 0.72 0.475684
Target:  5'- cGG-ACGCCcGg-GCGGCG-CGGGCCc -3'
miRNA:   3'- aCCaUGCGGaCgaUGCCGCuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 86349 0.72 0.484717
Target:  5'- uUGGUcCGCCcggcccgcGCUcguuCGGCGuCGGGCCg -3'
miRNA:   3'- -ACCAuGCGGa-------CGAu---GCCGCuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 181386 0.72 0.484717
Target:  5'- cGGcGCGCCgcgcucGCUguucGCGGCGGCGGcCCg -3'
miRNA:   3'- aCCaUGCGGa-----CGA----UGCCGCUGCCcGG- -5'
10923 3' -59.8 NC_002794.1 + 58118 0.72 0.506722
Target:  5'- aUGGgccgACGCUUGgaACGGCGGCucgaagagcaggaugGGGUCg -3'
miRNA:   3'- -ACCa---UGCGGACgaUGCCGCUG---------------CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.