miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10923 3' -59.8 NC_002794.1 + 138961 0.66 0.821847
Target:  5'- aGGUGcCGCgCgugGCcACgGGCGcCGGGCUg -3'
miRNA:   3'- aCCAU-GCG-Ga--CGaUG-CCGCuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 73216 0.66 0.82103
Target:  5'- cGGUggACGugaucuaCCUGCUgGCGGCG-CaGGCCc -3'
miRNA:   3'- aCCA--UGC-------GGACGA-UGCCGCuGcCCGG- -5'
10923 3' -59.8 NC_002794.1 + 88796 0.66 0.813606
Target:  5'- cGGgcgcgGCGCCgccgGCauguCGGagcCGACGGGCg -3'
miRNA:   3'- aCCa----UGCGGa---CGau--GCC---GCUGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 1545 0.66 0.813606
Target:  5'- ---aGCGCCUGCcGCaGCGgaucgcgccACGGGCUc -3'
miRNA:   3'- accaUGCGGACGaUGcCGC---------UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 49682 0.66 0.813606
Target:  5'- aGGaGCGCUucgagGCcgaGGCG-CGGGCCu -3'
miRNA:   3'- aCCaUGCGGa----CGaugCCGCuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 90432 0.66 0.813606
Target:  5'- gGGUGgcCGCC-GCcGCGcCGGCGGcGCCg -3'
miRNA:   3'- aCCAU--GCGGaCGaUGCcGCUGCC-CGG- -5'
10923 3' -59.8 NC_002794.1 + 93958 0.66 0.813606
Target:  5'- aGGUgaccugcaACGCCUuCUACGGguucACGGGCUu -3'
miRNA:   3'- aCCA--------UGCGGAcGAUGCCgc--UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 53833 0.66 0.813606
Target:  5'- aGGUGCuucGCCUGUcgcgggaccgUAcCGGCGguuccgguGCGGGCUc -3'
miRNA:   3'- aCCAUG---CGGACG----------AU-GCCGC--------UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 76424 0.66 0.805215
Target:  5'- aGGUccgACGgCgGCgGCGGUGGCGGcGUCg -3'
miRNA:   3'- aCCA---UGCgGaCGaUGCCGCUGCC-CGG- -5'
10923 3' -59.8 NC_002794.1 + 94053 0.66 0.805215
Target:  5'- cUGGUugGC--GCaGCGGCGcgccgugcGCGaGGCCa -3'
miRNA:   3'- -ACCAugCGgaCGaUGCCGC--------UGC-CCGG- -5'
10923 3' -59.8 NC_002794.1 + 8859 0.66 0.805215
Target:  5'- cGGcUGCGUCgucaGgUACGGCGucaGCGGGUg -3'
miRNA:   3'- aCC-AUGCGGa---CgAUGCCGC---UGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 7609 0.66 0.796681
Target:  5'- cGGcgGCGgCgGCgguaGCGGCGGGCCg -3'
miRNA:   3'- aCCa-UGCgGaCGaugcCGCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 71621 0.66 0.796681
Target:  5'- -aGUGCGCCUGUUcccCGcGCG-CGGGUa -3'
miRNA:   3'- acCAUGCGGACGAu--GC-CGCuGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 149555 0.66 0.796681
Target:  5'- ---aACGUUccgaGCgcgGCGGCGACGGcGCCg -3'
miRNA:   3'- accaUGCGGa---CGa--UGCCGCUGCC-CGG- -5'
10923 3' -59.8 NC_002794.1 + 140515 0.66 0.796681
Target:  5'- gGGUcGCGCCcgagGCggccgagGCGGcCGAgGcGGCCg -3'
miRNA:   3'- aCCA-UGCGGa---CGa------UGCC-GCUgC-CCGG- -5'
10923 3' -59.8 NC_002794.1 + 140563 0.66 0.796681
Target:  5'- aGGgcgGCGgCgGCgucGCGGCGggcGCGGGCg -3'
miRNA:   3'- aCCa--UGCgGaCGa--UGCCGC---UGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 16199 0.66 0.796681
Target:  5'- cGGgcuCGCCggacgGCacccgcgGCGGCGACGGuGgCg -3'
miRNA:   3'- aCCau-GCGGa----CGa------UGCCGCUGCC-CgG- -5'
10923 3' -59.8 NC_002794.1 + 129017 0.66 0.796681
Target:  5'- cGG-GCGCC-GCcguCGGCGcgGCGaGGCCg -3'
miRNA:   3'- aCCaUGCGGaCGau-GCCGC--UGC-CCGG- -5'
10923 3' -59.8 NC_002794.1 + 9592 0.66 0.796681
Target:  5'- cGGaucacCGCCUGgcGCGGCGGCaccgcGGCCa -3'
miRNA:   3'- aCCau---GCGGACgaUGCCGCUGc----CCGG- -5'
10923 3' -59.8 NC_002794.1 + 162180 0.66 0.79582
Target:  5'- cGcUGCGCUcGCUGCGccuguucGUGGCGGGCg -3'
miRNA:   3'- aCcAUGCGGaCGAUGC-------CGCUGCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.