miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10923 3' -59.8 NC_002794.1 + 93787 0.67 0.788012
Target:  5'- cGG-GCGaCCUGCcGCGGgcCGACGaGCCg -3'
miRNA:   3'- aCCaUGC-GGACGaUGCC--GCUGCcCGG- -5'
10923 3' -59.8 NC_002794.1 + 73677 0.67 0.788012
Target:  5'- cGGcgcgcGCGUgUGCgacGCGGCGaaGCGGuGCCg -3'
miRNA:   3'- aCCa----UGCGgACGa--UGCCGC--UGCC-CGG- -5'
10923 3' -59.8 NC_002794.1 + 80012 0.67 0.779215
Target:  5'- cGGgcucGgGCCUGggACGcGCGAgGGGUCc -3'
miRNA:   3'- aCCa---UgCGGACgaUGC-CGCUgCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 171879 0.67 0.779215
Target:  5'- aGGccgGCGCCaccgucGCUcCGucCGACGGGCCg -3'
miRNA:   3'- aCCa--UGCGGa-----CGAuGCc-GCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 93172 0.67 0.779215
Target:  5'- gGGUGuCGUacgUGCUgACGGC--CGGGCCg -3'
miRNA:   3'- aCCAU-GCGg--ACGA-UGCCGcuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 108943 0.67 0.779215
Target:  5'- cGGUgACGCCcGUgGCGGgcaGGCGGGgCg -3'
miRNA:   3'- aCCA-UGCGGaCGaUGCCg--CUGCCCgG- -5'
10923 3' -59.8 NC_002794.1 + 104109 0.67 0.779215
Target:  5'- aGGU--GCCgGCggGCGGCaccgcgcagGACGGGCUg -3'
miRNA:   3'- aCCAugCGGaCGa-UGCCG---------CUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 100107 0.67 0.778328
Target:  5'- cUGGUACucgcggggcggcgGCC-GCgACGGCGGCcgGGGCg -3'
miRNA:   3'- -ACCAUG-------------CGGaCGaUGCCGCUG--CCCGg -5'
10923 3' -59.8 NC_002794.1 + 144617 0.67 0.778328
Target:  5'- cGGU-CGCUU-CUAgaaggcgUGGgGGCGGGCCg -3'
miRNA:   3'- aCCAuGCGGAcGAU-------GCCgCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 82516 0.67 0.773878
Target:  5'- -cGUGgGCCUGUUcguaaGGCGuuucccggaacggguGCGGGCCg -3'
miRNA:   3'- acCAUgCGGACGAug---CCGC---------------UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 7517 0.67 0.773878
Target:  5'- cGGcgGCGCCgucgcgcccguccgGCcgGCGGCGGCcgaGGGCg -3'
miRNA:   3'- aCCa-UGCGGa-------------CGa-UGCCGCUG---CCCGg -5'
10923 3' -59.8 NC_002794.1 + 73508 0.67 0.773878
Target:  5'- cGGagcaccgAgGUCUGCUACGGCGGCaGcuaccugaaggugcuGGCCa -3'
miRNA:   3'- aCCa------UgCGGACGAUGCCGCUG-C---------------CCGG- -5'
10923 3' -59.8 NC_002794.1 + 95848 0.67 0.770298
Target:  5'- --uUACuGCC-GCUACGGCGACGcGCa -3'
miRNA:   3'- accAUG-CGGaCGAUGCCGCUGCcCGg -5'
10923 3' -59.8 NC_002794.1 + 181263 0.67 0.770298
Target:  5'- gUGGcgagcGCGCCggGC-ACcGCGACGgGGCCg -3'
miRNA:   3'- -ACCa----UGCGGa-CGaUGcCGCUGC-CCGG- -5'
10923 3' -59.8 NC_002794.1 + 142103 0.67 0.770298
Target:  5'- ----cCGCCgccGCUGcCGGCGGCGGGaCg -3'
miRNA:   3'- accauGCGGa--CGAU-GCCGCUGCCCgG- -5'
10923 3' -59.8 NC_002794.1 + 95348 0.67 0.7694
Target:  5'- -cGUGCGUCUGUUAuccgguCGGCGgcaccgaggagcaGCGGGCg -3'
miRNA:   3'- acCAUGCGGACGAU------GCCGC-------------UGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 109856 0.67 0.7694
Target:  5'- cGGUuccgaacccgcugGCGCCgaccgUGCGGCGGacaggccucauCGGGCCg -3'
miRNA:   3'- aCCA-------------UGCGGacg--AUGCCGCU-----------GCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 126950 0.67 0.761268
Target:  5'- ---cGCGUCgcgggGCUcGCGGCGuccucgucgcccGCGGGCCg -3'
miRNA:   3'- accaUGCGGa----CGA-UGCCGC------------UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 136501 0.67 0.761268
Target:  5'- ---aACGgCUGCUgcgccaccACGGCGccgcgccugcuGCGGGCCu -3'
miRNA:   3'- accaUGCgGACGA--------UGCCGC-----------UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 89918 0.67 0.761268
Target:  5'- cUGG-ACGCgCUGUacgaACGGCuGgGGGCCg -3'
miRNA:   3'- -ACCaUGCG-GACGa---UGCCGcUgCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.