miRNA display CGI


Results 1 - 20 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10923 3' -59.8 NC_002794.1 + 741 0.7 0.578846
Target:  5'- -cGUGCGCCcGCgGCGcGCG-CGGGCUc -3'
miRNA:   3'- acCAUGCGGaCGaUGC-CGCuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 1545 0.66 0.813606
Target:  5'- ---aGCGCCUGCcGCaGCGgaucgcgccACGGGCUc -3'
miRNA:   3'- accaUGCGGACGaUGcCGC---------UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 2804 0.69 0.647061
Target:  5'- ---aGCGCCcGCacCGGCuGCGGGCCg -3'
miRNA:   3'- accaUGCGGaCGauGCCGcUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 3845 0.71 0.559576
Target:  5'- cGGUggccGCGgCUGCUguuucugugGCGGCGGCGGcuGCUg -3'
miRNA:   3'- aCCA----UGCgGACGA---------UGCCGCUGCC--CGG- -5'
10923 3' -59.8 NC_002794.1 + 4195 0.76 0.289163
Target:  5'- gGGgacgGCGCCgGCaGCGGCGGCGGcguGCCc -3'
miRNA:   3'- aCCa---UGCGGaCGaUGCCGCUGCC---CGG- -5'
10923 3' -59.8 NC_002794.1 + 6808 0.75 0.329868
Target:  5'- gGGcUGCGCgUcGCgUACGGCGucuCGGGCCg -3'
miRNA:   3'- aCC-AUGCGgA-CG-AUGCCGCu--GCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 7322 0.68 0.714716
Target:  5'- ---aGCGCaggUGUcGCGGCGGCGGGUa -3'
miRNA:   3'- accaUGCGg--ACGaUGCCGCUGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 7517 0.67 0.773878
Target:  5'- cGGcgGCGCCgucgcgcccguccgGCcgGCGGCGGCcgaGGGCg -3'
miRNA:   3'- aCCa-UGCGGa-------------CGa-UGCCGCUG---CCCGg -5'
10923 3' -59.8 NC_002794.1 + 7609 0.66 0.796681
Target:  5'- cGGcgGCGgCgGCgguaGCGGCGGGCCg -3'
miRNA:   3'- aCCa-UGCgGaCGaugcCGCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 8859 0.66 0.805215
Target:  5'- cGGcUGCGUCgucaGgUACGGCGucaGCGGGUg -3'
miRNA:   3'- aCC-AUGCGGa---CgAUGCCGC---UGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 8932 0.68 0.714716
Target:  5'- -aGUGCGCCgccaccgccGCcACGGCcccCGGGCCg -3'
miRNA:   3'- acCAUGCGGa--------CGaUGCCGcu-GCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 9592 0.66 0.796681
Target:  5'- cGGaucacCGCCUGgcGCGGCGGCaccgcGGCCa -3'
miRNA:   3'- aCCau---GCGGACgaUGCCGCUGc----CCGG- -5'
10923 3' -59.8 NC_002794.1 + 10407 0.69 0.656818
Target:  5'- aGGUcuccgcgacaaACGCCgcggGCggcggccGCGGCGAgGGGaCCg -3'
miRNA:   3'- aCCA-----------UGCGGa---CGa------UGCCGCUgCCC-GG- -5'
10923 3' -59.8 NC_002794.1 + 11300 0.73 0.406702
Target:  5'- cGG-ACGCCUcacgcgccGCcGCGGCGGCGGcgGCCa -3'
miRNA:   3'- aCCaUGCGGA--------CGaUGCCGCUGCC--CGG- -5'
10923 3' -59.8 NC_002794.1 + 11363 0.72 0.475684
Target:  5'- cGG-ACGCCcGg-GCGGCG-CGGGCCc -3'
miRNA:   3'- aCCaUGCGGaCgaUGCCGCuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 11408 0.66 0.821847
Target:  5'- ---cGCGCC-GCUGCcGCccGCGGGCCg -3'
miRNA:   3'- accaUGCGGaCGAUGcCGc-UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 12174 0.7 0.578846
Target:  5'- gGGUcgaGCGCCcGCcGCGcGCGGCGGcacaGCCa -3'
miRNA:   3'- aCCA---UGCGGaCGaUGC-CGCUGCC----CGG- -5'
10923 3' -59.8 NC_002794.1 + 15995 0.72 0.457873
Target:  5'- gGGU-CGCCgGuCUGucCGGCGACGGGUa -3'
miRNA:   3'- aCCAuGCGGaC-GAU--GCCGCUGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 16199 0.66 0.796681
Target:  5'- cGGgcuCGCCggacgGCacccgcgGCGGCGACGGuGgCg -3'
miRNA:   3'- aCCau-GCGGa----CGa------UGCCGCUGCC-CgG- -5'
10923 3' -59.8 NC_002794.1 + 16663 0.68 0.733586
Target:  5'- aGGcACGCCccgGCcgGCGGCacgacgGACGuGGCCc -3'
miRNA:   3'- aCCaUGCGGa--CGa-UGCCG------CUGC-CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.