miRNA display CGI


Results 21 - 40 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10923 3' -59.8 NC_002794.1 + 18026 0.68 0.69559
Target:  5'- cUGGgcgaugauCGCCUGCcAUGcGCGAgCGcGGCCa -3'
miRNA:   3'- -ACCau------GCGGACGaUGC-CGCU-GC-CCGG- -5'
10923 3' -59.8 NC_002794.1 + 39458 0.68 0.69559
Target:  5'- cGGccgGCGCCgcggccgcgGCcACGGcCGGCGGGUg -3'
miRNA:   3'- aCCa--UGCGGa--------CGaUGCC-GCUGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 41493 0.75 0.315846
Target:  5'- cGGUccAgGCC-GCgGCGGCGGCGGGCa -3'
miRNA:   3'- aCCA--UgCGGaCGaUGCCGCUGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 42268 0.71 0.559576
Target:  5'- gGGUccaacACGcCCUGgaagagACGGCG-CGGGCCg -3'
miRNA:   3'- aCCA-----UGC-GGACga----UGCCGCuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 43272 0.7 0.617754
Target:  5'- cGGc-CGCCacguccCUGCGGCG-CGGGCCc -3'
miRNA:   3'- aCCauGCGGac----GAUGCCGCuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 45465 0.66 0.82993
Target:  5'- cGG-GCGCCcugGUUGCGGCaGAagcCGuGGCCc -3'
miRNA:   3'- aCCaUGCGGa--CGAUGCCG-CU---GC-CCGG- -5'
10923 3' -59.8 NC_002794.1 + 45645 0.69 0.627522
Target:  5'- cGGcUGCuGCCgaGCUGCGuGCGACGGcaGCUg -3'
miRNA:   3'- aCC-AUG-CGGa-CGAUGC-CGCUGCC--CGG- -5'
10923 3' -59.8 NC_002794.1 + 46143 0.74 0.358515
Target:  5'- gUGGgcCGCCUgccucGCUACGGCGugccgguggagcgGCGGGaCCg -3'
miRNA:   3'- -ACCauGCGGA-----CGAUGCCGC-------------UGCCC-GG- -5'
10923 3' -59.8 NC_002794.1 + 48646 0.7 0.617754
Target:  5'- cGGgccgGgGCCgggGCgUugGcGCGAUGGGCCc -3'
miRNA:   3'- aCCa---UgCGGa--CG-AugC-CGCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 48875 0.74 0.398528
Target:  5'- aGGUcgGCGCCgccgGCcgacgucgGCGGCGGCGGccGCCg -3'
miRNA:   3'- aCCA--UGCGGa---CGa-------UGCCGCUGCC--CGG- -5'
10923 3' -59.8 NC_002794.1 + 49145 0.69 0.67627
Target:  5'- cUGGUgGC-CCUGCUGgaucucgaucucUGaCGACGGGCCg -3'
miRNA:   3'- -ACCA-UGcGGACGAU------------GCcGCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 49682 0.66 0.813606
Target:  5'- aGGaGCGCUucgagGCcgaGGCG-CGGGCCu -3'
miRNA:   3'- aCCaUGCGGa----CGaugCCGCuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 50295 0.67 0.752134
Target:  5'- cGGUucgcggacgaGCGCCgacGgaGCGGCGGCcGGCUc -3'
miRNA:   3'- aCCA----------UGCGGa--CgaUGCCGCUGcCCGG- -5'
10923 3' -59.8 NC_002794.1 + 50541 0.71 0.540489
Target:  5'- cGGcGCGCg-GCggGCGGCGcuCGGGCCc -3'
miRNA:   3'- aCCaUGCGgaCGa-UGCCGCu-GCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 52468 0.67 0.742904
Target:  5'- gGGUcaGCugCUGCUcgacCGGCG-CGGGCCg -3'
miRNA:   3'- aCCAugCG--GACGAu---GCCGCuGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 52531 0.68 0.68595
Target:  5'- cGGU-CGCgUGCUcgGGCaGCGGGCUc -3'
miRNA:   3'- aCCAuGCGgACGAugCCGcUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 53377 0.66 0.821847
Target:  5'- gUGG-ACGCgUGCggcgccgGCaGCGACGuGGCg -3'
miRNA:   3'- -ACCaUGCGgACGa------UGcCGCUGC-CCGg -5'
10923 3' -59.8 NC_002794.1 + 53460 0.69 0.637294
Target:  5'- cGGUGCaGgCgGCgucgGCGGCGcCGGGCg -3'
miRNA:   3'- aCCAUG-CgGaCGa---UGCCGCuGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 53833 0.66 0.813606
Target:  5'- aGGUGCuucGCCUGUcgcgggaccgUAcCGGCGguuccgguGCGGGCUc -3'
miRNA:   3'- aCCAUG---CGGACG----------AU-GCCGC--------UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 54416 0.67 0.752134
Target:  5'- cGGggGCGCCgGgaGCGGCG-CGGcGUCc -3'
miRNA:   3'- aCCa-UGCGGaCgaUGCCGCuGCC-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.