miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10923 3' -59.8 NC_002794.1 + 194993 0.67 0.742904
Target:  5'- ---cGCGCCcGCgaggcgguCGGCGugcgcGCGGGCCg -3'
miRNA:   3'- accaUGCGGaCGau------GCCGC-----UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 193770 0.66 0.83785
Target:  5'- -----gGCCUuaUACGGCGACcgGGGCg -3'
miRNA:   3'- accaugCGGAcgAUGCCGCUG--CCCGg -5'
10923 3' -59.8 NC_002794.1 + 183665 0.68 0.724187
Target:  5'- cGGccggGCGCCgcucggacgUGCcgGCGGCGucgGCGGcGCCg -3'
miRNA:   3'- aCCa---UGCGG---------ACGa-UGCCGC---UGCC-CGG- -5'
10923 3' -59.8 NC_002794.1 + 183145 0.69 0.666556
Target:  5'- gGGcUGCGCgUuCcGCGGCGACgaGGGCCc -3'
miRNA:   3'- aCC-AUGCGgAcGaUGCCGCUG--CCCGG- -5'
10923 3' -59.8 NC_002794.1 + 182905 0.69 0.666556
Target:  5'- gGcGUugGCCgUGU--CGGUGACGuGGCCu -3'
miRNA:   3'- aC-CAugCGG-ACGauGCCGCUGC-CCGG- -5'
10923 3' -59.8 NC_002794.1 + 182590 0.66 0.83785
Target:  5'- gUGGUggaGCgGCC-GCUguugACGGCGGCauGGGCg -3'
miRNA:   3'- -ACCA---UG-CGGaCGA----UGCCGCUG--CCCGg -5'
10923 3' -59.8 NC_002794.1 + 181386 0.72 0.484717
Target:  5'- cGGcGCGCCgcgcucGCUguucGCGGCGGCGGcCCg -3'
miRNA:   3'- aCCaUGCGGa-----CGA----UGCCGCUGCCcGG- -5'
10923 3' -59.8 NC_002794.1 + 181263 0.67 0.770298
Target:  5'- gUGGcgagcGCGCCggGC-ACcGCGACGgGGCCg -3'
miRNA:   3'- -ACCa----UGCGGa-CGaUGcCGCUGC-CCGG- -5'
10923 3' -59.8 NC_002794.1 + 181214 0.68 0.714716
Target:  5'- cGGagACGCCgGCgccGCGGCGuCGGuCCg -3'
miRNA:   3'- aCCa-UGCGGaCGa--UGCCGCuGCCcGG- -5'
10923 3' -59.8 NC_002794.1 + 181173 0.73 0.423363
Target:  5'- cGGU-CGCgCUGCUccugACGGCGugGGGa- -3'
miRNA:   3'- aCCAuGCG-GACGA----UGCCGCugCCCgg -5'
10923 3' -59.8 NC_002794.1 + 180665 0.69 0.647061
Target:  5'- gGGUGaacgacCGCCcGCgaugGCGGCGucccccguccGCGGGCUg -3'
miRNA:   3'- aCCAU------GCGGaCGa---UGCCGC----------UGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 178431 0.68 0.705181
Target:  5'- cGGUcuccGCGCC-GC--CGGCGcuCGGGCCc -3'
miRNA:   3'- aCCA----UGCGGaCGauGCCGCu-GCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 176405 0.68 0.68595
Target:  5'- gGGcACGagcgGCgGCGGCGGCGGGaCCc -3'
miRNA:   3'- aCCaUGCgga-CGaUGCCGCUGCCC-GG- -5'
10923 3' -59.8 NC_002794.1 + 176336 0.69 0.666556
Target:  5'- cGGaGCGCCgGC-GCGGCG-CGGcccGCCg -3'
miRNA:   3'- aCCaUGCGGaCGaUGCCGCuGCC---CGG- -5'
10923 3' -59.8 NC_002794.1 + 171879 0.67 0.779215
Target:  5'- aGGccgGCGCCaccgucGCUcCGucCGACGGGCCg -3'
miRNA:   3'- aCCa--UGCGGa-----CGAuGCc-GCUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 169771 0.69 0.67627
Target:  5'- gGGgcaGCGCCgacgGCccCGGCGAucgccgUGGGCCu -3'
miRNA:   3'- aCCa--UGCGGa---CGauGCCGCU------GCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 162998 0.66 0.83785
Target:  5'- cGGccgaGCCgGCggGCGGCGGCGGcGgCg -3'
miRNA:   3'- aCCaug-CGGaCGa-UGCCGCUGCC-CgG- -5'
10923 3' -59.8 NC_002794.1 + 162180 0.66 0.79582
Target:  5'- cGcUGCGCUcGCUGCGccuguucGUGGCGGGCg -3'
miRNA:   3'- aCcAUGCGGaCGAUGC-------CGCUGCCCGg -5'
10923 3' -59.8 NC_002794.1 + 160881 0.69 0.637294
Target:  5'- cUGGccACGaaaCUGCgcCGGCuGCGGGCCc -3'
miRNA:   3'- -ACCa-UGCg--GACGauGCCGcUGCCCGG- -5'
10923 3' -59.8 NC_002794.1 + 158124 0.74 0.374646
Target:  5'- cGGcgGCGCCgccgGCgGCGGCGcgGCGGcGCCg -3'
miRNA:   3'- aCCa-UGCGGa---CGaUGCCGC--UGCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.