Results 1 - 20 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10923 | 3' | -59.8 | NC_002794.1 | + | 101862 | 0.85 | 0.078108 |
Target: 5'- cGG-ACGCCgGCgcCGGCGGCGGGCCg -3' miRNA: 3'- aCCaUGCGGaCGauGCCGCUGCCCGG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 91380 | 0.66 | 0.821847 |
Target: 5'- aGG-AUGCggGCggccACGGCGGcCGGGUCg -3' miRNA: 3'- aCCaUGCGgaCGa---UGCCGCU-GCCCGG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 11408 | 0.66 | 0.821847 |
Target: 5'- ---cGCGCC-GCUGCcGCccGCGGGCCg -3' miRNA: 3'- accaUGCGGaCGAUGcCGc-UGCCCGG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 95925 | 0.66 | 0.82993 |
Target: 5'- gUGGUcuuGCGgCUGUU-CGGCcggaccgccGACGGcGCCa -3' miRNA: 3'- -ACCA---UGCgGACGAuGCCG---------CUGCC-CGG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 141009 | 0.66 | 0.821847 |
Target: 5'- ---aACGCCcGUaggcCGGCG-CGGGCCg -3' miRNA: 3'- accaUGCGGaCGau--GCCGCuGCCCGG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 95413 | 0.66 | 0.821847 |
Target: 5'- ----gUGUCUGa-GCGGCGGCGGcGCCu -3' miRNA: 3'- accauGCGGACgaUGCCGCUGCC-CGG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 53377 | 0.66 | 0.821847 |
Target: 5'- gUGG-ACGCgUGCggcgccgGCaGCGACGuGGCg -3' miRNA: 3'- -ACCaUGCGgACGa------UGcCGCUGC-CCGg -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 112223 | 0.66 | 0.821847 |
Target: 5'- ---cACGCCUaccGCUGCGGCG-CGGucaCCg -3' miRNA: 3'- accaUGCGGA---CGAUGCCGCuGCCc--GG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 137151 | 0.66 | 0.821847 |
Target: 5'- cUGGUGCGCUUcCUGCaccGCGucucgcgccucaGCGGGCUc -3' miRNA: 3'- -ACCAUGCGGAcGAUGc--CGC------------UGCCCGG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 45465 | 0.66 | 0.82993 |
Target: 5'- cGG-GCGCCcugGUUGCGGCaGAagcCGuGGCCc -3' miRNA: 3'- aCCaUGCGGa--CGAUGCCG-CU---GC-CCGG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 157743 | 0.66 | 0.82993 |
Target: 5'- cGGgagagccGCGCCaGCUGgGGCGugGaGUCg -3' miRNA: 3'- aCCa------UGCGGaCGAUgCCGCugCcCGG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 102027 | 0.66 | 0.834702 |
Target: 5'- cGGccauCGCCgagaucauggacgGCcGCGGCGGCGaGCCg -3' miRNA: 3'- aCCau--GCGGa------------CGaUGCCGCUGCcCGG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 88645 | 0.66 | 0.83785 |
Target: 5'- cGGcgcCGCCggGCgGCGcGCGACGGGg- -3' miRNA: 3'- aCCau-GCGGa-CGaUGC-CGCUGCCCgg -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 108589 | 0.66 | 0.83785 |
Target: 5'- gGGUGCagGCCggGCgggugGgGGUGgggaaGCGGGCCu -3' miRNA: 3'- aCCAUG--CGGa-CGa----UgCCGC-----UGCCCGG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 77225 | 0.66 | 0.83785 |
Target: 5'- cUGcUGCGCCaGCU-CGGCGGCcagcucguccguGGGCg -3' miRNA: 3'- -ACcAUGCGGaCGAuGCCGCUG------------CCCGg -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 120231 | 0.66 | 0.83785 |
Target: 5'- cUGGUAC-CCUuucucGCUacacacgaGCGGCaGCGGcGCCg -3' miRNA: 3'- -ACCAUGcGGA-----CGA--------UGCCGcUGCC-CGG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 113820 | 0.66 | 0.83785 |
Target: 5'- cGcGUGgGCg-GCgGCGGCGGCGGcGUCg -3' miRNA: 3'- aC-CAUgCGgaCGaUGCCGCUGCC-CGG- -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 193770 | 0.66 | 0.83785 |
Target: 5'- -----gGCCUuaUACGGCGACcgGGGCg -3' miRNA: 3'- accaugCGGAcgAUGCCGCUG--CCCGg -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 182590 | 0.66 | 0.83785 |
Target: 5'- gUGGUggaGCgGCC-GCUguugACGGCGGCauGGGCg -3' miRNA: 3'- -ACCA---UG-CGGaCGA----UGCCGCUG--CCCGg -5' |
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10923 | 3' | -59.8 | NC_002794.1 | + | 72976 | 0.66 | 0.82993 |
Target: 5'- --cUGCGCCgaGCUcaACGaGCGcACGGGCg -3' miRNA: 3'- accAUGCGGa-CGA--UGC-CGC-UGCCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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