miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10923 5' -54.4 NC_002794.1 + 108691 0.66 0.969034
Target:  5'- uGCAGGCCGgGCgggugGgggUGCagGCCGgGCg -3'
miRNA:   3'- -CGUCUGGUgCGa----Ca--ACGa-CGGCaUGa -5'
10923 5' -54.4 NC_002794.1 + 108649 0.66 0.969034
Target:  5'- uGCAGGCCGgGCgggugGgggUGCagGCCGgGCg -3'
miRNA:   3'- -CGUCUGGUgCGa----Ca--ACGa-CGGCaUGa -5'
10923 5' -54.4 NC_002794.1 + 108607 0.66 0.969034
Target:  5'- uGCAGGCCGgGCgggugGgggUGCagGCCGgGCg -3'
miRNA:   3'- -CGUCUGGUgCGa----Ca--ACGa-CGGCaUGa -5'
10923 5' -54.4 NC_002794.1 + 108733 0.66 0.969034
Target:  5'- uGCAGGCCGgGCgggugGgggUGCagGCCGgGCg -3'
miRNA:   3'- -CGUCUGGUgCGa----Ca--ACGa-CGGCaUGa -5'
10923 5' -54.4 NC_002794.1 + 108775 0.66 0.969034
Target:  5'- uGCAGGCCGgGCgggugGgggUGCagGCCGgGCg -3'
miRNA:   3'- -CGUCUGGUgCGa----Ca--ACGa-CGGCaUGa -5'
10923 5' -54.4 NC_002794.1 + 55439 0.66 0.967819
Target:  5'- gGguGGCCGCGacguacaaccggaUGUUGCUgugGCUGUAUUa -3'
miRNA:   3'- -CguCUGGUGCg------------ACAACGA---CGGCAUGA- -5'
10923 5' -54.4 NC_002794.1 + 71327 0.66 0.965934
Target:  5'- cGCcGACgCugGCGCUGcgGCUgaaGCCGUACa -3'
miRNA:   3'- -CGuCUG-G--UGCGACaaCGA---CGGCAUGa -5'
10923 5' -54.4 NC_002794.1 + 72885 0.66 0.965934
Target:  5'- gGguGGCUguacgcGCGcCUGgUGCggGCCGUGCUg -3'
miRNA:   3'- -CguCUGG------UGC-GACaACGa-CGGCAUGA- -5'
10923 5' -54.4 NC_002794.1 + 88610 0.66 0.965934
Target:  5'- cGCGGACCugGCccGgcGgaGCCGcGCc -3'
miRNA:   3'- -CGUCUGGugCGa-CaaCgaCGGCaUGa -5'
10923 5' -54.4 NC_002794.1 + 3736 0.66 0.965934
Target:  5'- uGCuGcuGCUGCuGCUGUUGCUGCUGccgGCg -3'
miRNA:   3'- -CGuC--UGGUG-CGACAACGACGGCa--UGa -5'
10923 5' -54.4 NC_002794.1 + 105395 0.66 0.962621
Target:  5'- gGCgAGGCCGCGCgcggcGggGCcGCCGUcccGCg -3'
miRNA:   3'- -CG-UCUGGUGCGa----CaaCGaCGGCA---UGa -5'
10923 5' -54.4 NC_002794.1 + 87980 0.66 0.95909
Target:  5'- cGgAGGCgGCGCggcggGUgcgGCUGCCGgguCUg -3'
miRNA:   3'- -CgUCUGgUGCGa----CAa--CGACGGCau-GA- -5'
10923 5' -54.4 NC_002794.1 + 104098 0.66 0.955337
Target:  5'- gGCGGcACCGCGCaGgacggGCUGCUGaagGCg -3'
miRNA:   3'- -CGUC-UGGUGCGaCaa---CGACGGCa--UGa -5'
10923 5' -54.4 NC_002794.1 + 142118 0.67 0.947146
Target:  5'- cGCcGGCCGcCGCUGccgccgccGCUGCCGgcgGCg -3'
miRNA:   3'- -CGuCUGGU-GCGACaa------CGACGGCa--UGa -5'
10923 5' -54.4 NC_002794.1 + 161595 0.67 0.947146
Target:  5'- gGCGGACCGCGCgcagGCgGCCa---- -3'
miRNA:   3'- -CGUCUGGUGCGacaaCGaCGGcauga -5'
10923 5' -54.4 NC_002794.1 + 51029 0.67 0.947146
Target:  5'- cGCGGACgAgcCGCUGgaGCgggUGCCGaUGCUg -3'
miRNA:   3'- -CGUCUGgU--GCGACaaCG---ACGGC-AUGA- -5'
10923 5' -54.4 NC_002794.1 + 113975 0.67 0.942702
Target:  5'- -uGGGCCACGCUc-UGgaGCCGcUGCUu -3'
miRNA:   3'- cgUCUGGUGCGAcaACgaCGGC-AUGA- -5'
10923 5' -54.4 NC_002794.1 + 70172 0.67 0.938021
Target:  5'- aCGGGCgACG-UGUUGCUGCgCGUGa- -3'
miRNA:   3'- cGUCUGgUGCgACAACGACG-GCAUga -5'
10923 5' -54.4 NC_002794.1 + 72374 0.67 0.938021
Target:  5'- uGCGGACCAgCGUggaccUGUgcaucgccggGCUGCCGgcCUg -3'
miRNA:   3'- -CGUCUGGU-GCG-----ACAa---------CGACGGCauGA- -5'
10923 5' -54.4 NC_002794.1 + 124850 0.68 0.927944
Target:  5'- cCGGACCGCag-GUacUGCUGCuCGUGCa -3'
miRNA:   3'- cGUCUGGUGcgaCA--ACGACG-GCAUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.