Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10923 | 5' | -54.4 | NC_002794.1 | + | 26898 | 0.68 | 0.922547 |
Target: 5'- uCAGuuuuAUUAUGCUGUUGCUGUCGUuaACa -3' miRNA: 3'- cGUC----UGGUGCGACAACGACGGCA--UGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 104633 | 0.68 | 0.91691 |
Target: 5'- gGCGGACgGCGCg---GCgGCCGUcggGCUg -3' miRNA: 3'- -CGUCUGgUGCGacaaCGaCGGCA---UGA- -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 89190 | 0.68 | 0.91691 |
Target: 5'- gGCGGugU-CGCUG-UGCUGCuaCGUACg -3' miRNA: 3'- -CGUCugGuGCGACaACGACG--GCAUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 3817 | 0.68 | 0.911035 |
Target: 5'- gGCGGcgGCUGCuGCUGcUGCUGCUGcUGCUg -3' miRNA: 3'- -CGUC--UGGUG-CGACaACGACGGC-AUGA- -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 104376 | 0.68 | 0.911035 |
Target: 5'- aGCGcGACCA-GCUGUUGCUGUgCG-ACg -3' miRNA: 3'- -CGU-CUGGUgCGACAACGACG-GCaUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 167178 | 0.68 | 0.910435 |
Target: 5'- cGguGGCCGucgccgccgccguUGCUGcUGCUGCCGU-Cg -3' miRNA: 3'- -CguCUGGU-------------GCGACaACGACGGCAuGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 69587 | 0.69 | 0.878161 |
Target: 5'- gGCuGGCgGCGCUGg-GCuUGCUGUGCg -3' miRNA: 3'- -CGuCUGgUGCGACaaCG-ACGGCAUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 43072 | 0.69 | 0.873836 |
Target: 5'- cGCuGACCGCGCgcgaGcUGCugcucccgaucggggUGCCGUGCg -3' miRNA: 3'- -CGuCUGGUGCGa---CaACG---------------ACGGCAUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 60093 | 0.7 | 0.85577 |
Target: 5'- gGCGGugCugGCUGUcgaGCUGaaaGUGCUc -3' miRNA: 3'- -CGUCugGugCGACAa--CGACgg-CAUGA- -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 90972 | 0.7 | 0.85577 |
Target: 5'- aGCGGGCCGgcCGCgag-GC-GCCGUGCUg -3' miRNA: 3'- -CGUCUGGU--GCGacaaCGaCGGCAUGA- -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 9021 | 0.7 | 0.831558 |
Target: 5'- gGCGcccGACaGCGCgcgGgcGCUGCCGUGCa -3' miRNA: 3'- -CGU---CUGgUGCGa--CaaCGACGGCAUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 137406 | 0.71 | 0.805713 |
Target: 5'- cGCcuGGCCGCGCUGgcGCUGCaCG-ACc -3' miRNA: 3'- -CGu-CUGGUGCGACaaCGACG-GCaUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 163847 | 0.71 | 0.787681 |
Target: 5'- cGCAGACCaggcaggggACGC-GgcGCUGCCGaUACa -3' miRNA: 3'- -CGUCUGG---------UGCGaCaaCGACGGC-AUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 139773 | 0.71 | 0.769089 |
Target: 5'- aGCAGGCCGCGCaGcacgUGCgUGCUGcGCUg -3' miRNA: 3'- -CGUCUGGUGCGaCa---ACG-ACGGCaUGA- -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 99600 | 0.72 | 0.720631 |
Target: 5'- cCAGcACCACGCcgaccgGUauccGCUGCCGUACa -3' miRNA: 3'- cGUC-UGGUGCGa-----CAa---CGACGGCAUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 156337 | 0.74 | 0.628341 |
Target: 5'- uGCAGuucggcuACCAC-CUGggGCUGCUGUGCg -3' miRNA: 3'- -CGUC-------UGGUGcGACaaCGACGGCAUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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