miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10923 5' -54.4 NC_002794.1 + 3736 0.66 0.965934
Target:  5'- uGCuGcuGCUGCuGCUGUUGCUGCUGccgGCg -3'
miRNA:   3'- -CGuC--UGGUG-CGACAACGACGGCa--UGa -5'
10923 5' -54.4 NC_002794.1 + 3817 0.68 0.911035
Target:  5'- gGCGGcgGCUGCuGCUGcUGCUGCUGcUGCUg -3'
miRNA:   3'- -CGUC--UGGUG-CGACaACGACGGC-AUGA- -5'
10923 5' -54.4 NC_002794.1 + 9021 0.7 0.831558
Target:  5'- gGCGcccGACaGCGCgcgGgcGCUGCCGUGCa -3'
miRNA:   3'- -CGU---CUGgUGCGa--CaaCGACGGCAUGa -5'
10923 5' -54.4 NC_002794.1 + 26898 0.68 0.922547
Target:  5'- uCAGuuuuAUUAUGCUGUUGCUGUCGUuaACa -3'
miRNA:   3'- cGUC----UGGUGCGACAACGACGGCA--UGa -5'
10923 5' -54.4 NC_002794.1 + 43072 0.69 0.873836
Target:  5'- cGCuGACCGCGCgcgaGcUGCugcucccgaucggggUGCCGUGCg -3'
miRNA:   3'- -CGuCUGGUGCGa---CaACG---------------ACGGCAUGa -5'
10923 5' -54.4 NC_002794.1 + 51029 0.67 0.947146
Target:  5'- cGCGGACgAgcCGCUGgaGCgggUGCCGaUGCUg -3'
miRNA:   3'- -CGUCUGgU--GCGACaaCG---ACGGC-AUGA- -5'
10923 5' -54.4 NC_002794.1 + 55439 0.66 0.967819
Target:  5'- gGguGGCCGCGacguacaaccggaUGUUGCUgugGCUGUAUUa -3'
miRNA:   3'- -CguCUGGUGCg------------ACAACGA---CGGCAUGA- -5'
10923 5' -54.4 NC_002794.1 + 60093 0.7 0.85577
Target:  5'- gGCGGugCugGCUGUcgaGCUGaaaGUGCUc -3'
miRNA:   3'- -CGUCugGugCGACAa--CGACgg-CAUGA- -5'
10923 5' -54.4 NC_002794.1 + 69587 0.69 0.878161
Target:  5'- gGCuGGCgGCGCUGg-GCuUGCUGUGCg -3'
miRNA:   3'- -CGuCUGgUGCGACaaCG-ACGGCAUGa -5'
10923 5' -54.4 NC_002794.1 + 70172 0.67 0.938021
Target:  5'- aCGGGCgACG-UGUUGCUGCgCGUGa- -3'
miRNA:   3'- cGUCUGgUGCgACAACGACG-GCAUga -5'
10923 5' -54.4 NC_002794.1 + 71327 0.66 0.965934
Target:  5'- cGCcGACgCugGCGCUGcgGCUgaaGCCGUACa -3'
miRNA:   3'- -CGuCUG-G--UGCGACaaCGA---CGGCAUGa -5'
10923 5' -54.4 NC_002794.1 + 72374 0.67 0.938021
Target:  5'- uGCGGACCAgCGUggaccUGUgcaucgccggGCUGCCGgcCUg -3'
miRNA:   3'- -CGUCUGGU-GCG-----ACAa---------CGACGGCauGA- -5'
10923 5' -54.4 NC_002794.1 + 72885 0.66 0.965934
Target:  5'- gGguGGCUguacgcGCGcCUGgUGCggGCCGUGCUg -3'
miRNA:   3'- -CguCUGG------UGC-GACaACGa-CGGCAUGA- -5'
10923 5' -54.4 NC_002794.1 + 87980 0.66 0.95909
Target:  5'- cGgAGGCgGCGCggcggGUgcgGCUGCCGgguCUg -3'
miRNA:   3'- -CgUCUGgUGCGa----CAa--CGACGGCau-GA- -5'
10923 5' -54.4 NC_002794.1 + 88610 0.66 0.965934
Target:  5'- cGCGGACCugGCccGgcGgaGCCGcGCc -3'
miRNA:   3'- -CGUCUGGugCGa-CaaCgaCGGCaUGa -5'
10923 5' -54.4 NC_002794.1 + 89190 0.68 0.91691
Target:  5'- gGCGGugU-CGCUG-UGCUGCuaCGUACg -3'
miRNA:   3'- -CGUCugGuGCGACaACGACG--GCAUGa -5'
10923 5' -54.4 NC_002794.1 + 90972 0.7 0.85577
Target:  5'- aGCGGGCCGgcCGCgag-GC-GCCGUGCUg -3'
miRNA:   3'- -CGUCUGGU--GCGacaaCGaCGGCAUGA- -5'
10923 5' -54.4 NC_002794.1 + 99600 0.72 0.720631
Target:  5'- cCAGcACCACGCcgaccgGUauccGCUGCCGUACa -3'
miRNA:   3'- cGUC-UGGUGCGa-----CAa---CGACGGCAUGa -5'
10923 5' -54.4 NC_002794.1 + 104098 0.66 0.955337
Target:  5'- gGCGGcACCGCGCaGgacggGCUGCUGaagGCg -3'
miRNA:   3'- -CGUC-UGGUGCGaCaa---CGACGGCa--UGa -5'
10923 5' -54.4 NC_002794.1 + 104376 0.68 0.911035
Target:  5'- aGCGcGACCA-GCUGUUGCUGUgCG-ACg -3'
miRNA:   3'- -CGU-CUGGUgCGACAACGACG-GCaUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.