Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10923 | 5' | -54.4 | NC_002794.1 | + | 167178 | 0.68 | 0.910435 |
Target: 5'- cGguGGCCGucgccgccgccguUGCUGcUGCUGCCGU-Cg -3' miRNA: 3'- -CguCUGGU-------------GCGACaACGACGGCAuGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 163847 | 0.71 | 0.787681 |
Target: 5'- cGCAGACCaggcaggggACGC-GgcGCUGCCGaUACa -3' miRNA: 3'- -CGUCUGG---------UGCGaCaaCGACGGC-AUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 161595 | 0.67 | 0.947146 |
Target: 5'- gGCGGACCGCGCgcagGCgGCCa---- -3' miRNA: 3'- -CGUCUGGUGCGacaaCGaCGGcauga -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 156337 | 0.74 | 0.628341 |
Target: 5'- uGCAGuucggcuACCAC-CUGggGCUGCUGUGCg -3' miRNA: 3'- -CGUC-------UGGUGcGACaaCGACGGCAUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 142118 | 0.67 | 0.947146 |
Target: 5'- cGCcGGCCGcCGCUGccgccgccGCUGCCGgcgGCg -3' miRNA: 3'- -CGuCUGGU-GCGACaa------CGACGGCa--UGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 139773 | 0.71 | 0.769089 |
Target: 5'- aGCAGGCCGCGCaGcacgUGCgUGCUGcGCUg -3' miRNA: 3'- -CGUCUGGUGCGaCa---ACG-ACGGCaUGA- -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 137406 | 0.71 | 0.805713 |
Target: 5'- cGCcuGGCCGCGCUGgcGCUGCaCG-ACc -3' miRNA: 3'- -CGu-CUGGUGCGACaaCGACG-GCaUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 124850 | 0.68 | 0.927944 |
Target: 5'- cCGGACCGCag-GUacUGCUGCuCGUGCa -3' miRNA: 3'- cGUCUGGUGcgaCA--ACGACG-GCAUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 113975 | 0.67 | 0.942702 |
Target: 5'- -uGGGCCACGCUc-UGgaGCCGcUGCUu -3' miRNA: 3'- cgUCUGGUGCGAcaACgaCGGC-AUGA- -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 108775 | 0.66 | 0.969034 |
Target: 5'- uGCAGGCCGgGCgggugGgggUGCagGCCGgGCg -3' miRNA: 3'- -CGUCUGGUgCGa----Ca--ACGa-CGGCaUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 108733 | 0.66 | 0.969034 |
Target: 5'- uGCAGGCCGgGCgggugGgggUGCagGCCGgGCg -3' miRNA: 3'- -CGUCUGGUgCGa----Ca--ACGa-CGGCaUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 108691 | 0.66 | 0.969034 |
Target: 5'- uGCAGGCCGgGCgggugGgggUGCagGCCGgGCg -3' miRNA: 3'- -CGUCUGGUgCGa----Ca--ACGa-CGGCaUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 108649 | 0.66 | 0.969034 |
Target: 5'- uGCAGGCCGgGCgggugGgggUGCagGCCGgGCg -3' miRNA: 3'- -CGUCUGGUgCGa----Ca--ACGa-CGGCaUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 108607 | 0.66 | 0.969034 |
Target: 5'- uGCAGGCCGgGCgggugGgggUGCagGCCGgGCg -3' miRNA: 3'- -CGUCUGGUgCGa----Ca--ACGa-CGGCaUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 105395 | 0.66 | 0.962621 |
Target: 5'- gGCgAGGCCGCGCgcggcGggGCcGCCGUcccGCg -3' miRNA: 3'- -CG-UCUGGUGCGa----CaaCGaCGGCA---UGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 104633 | 0.68 | 0.91691 |
Target: 5'- gGCGGACgGCGCg---GCgGCCGUcggGCUg -3' miRNA: 3'- -CGUCUGgUGCGacaaCGaCGGCA---UGA- -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 104376 | 0.68 | 0.911035 |
Target: 5'- aGCGcGACCA-GCUGUUGCUGUgCG-ACg -3' miRNA: 3'- -CGU-CUGGUgCGACAACGACG-GCaUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 104098 | 0.66 | 0.955337 |
Target: 5'- gGCGGcACCGCGCaGgacggGCUGCUGaagGCg -3' miRNA: 3'- -CGUC-UGGUGCGaCaa---CGACGGCa--UGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 99600 | 0.72 | 0.720631 |
Target: 5'- cCAGcACCACGCcgaccgGUauccGCUGCCGUACa -3' miRNA: 3'- cGUC-UGGUGCGa-----CAa---CGACGGCAUGa -5' |
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10923 | 5' | -54.4 | NC_002794.1 | + | 90972 | 0.7 | 0.85577 |
Target: 5'- aGCGGGCCGgcCGCgag-GC-GCCGUGCUg -3' miRNA: 3'- -CGUCUGGU--GCGacaaCGaCGGCAUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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