miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 80540 0.66 0.449375
Target:  5'- cCGCaCGGUCGC-CGCGGCgUCCgggCCg -3'
miRNA:   3'- cGCG-GCCGGCGcGCGCCGgGGGga-GG- -5'
10924 3' -69.2 NC_002794.1 + 5660 0.66 0.449375
Target:  5'- cGCGCUccaGcGCCGCGCGCacccgccgGGCgCUCCggucgUCCa -3'
miRNA:   3'- -CGCGG---C-CGGCGCGCG--------CCGgGGGG-----AGG- -5'
10924 3' -69.2 NC_002794.1 + 160909 0.66 0.449375
Target:  5'- -gGCCcGCCGCGaccCGC-GCCUCCCgUCCc -3'
miRNA:   3'- cgCGGcCGGCGC---GCGcCGGGGGG-AGG- -5'
10924 3' -69.2 NC_002794.1 + 168371 0.66 0.449375
Target:  5'- cGCGCCgaGGCCGCGC-CaGUCCaucauCCaUCCa -3'
miRNA:   3'- -CGCGG--CCGGCGCGcGcCGGGg----GG-AGG- -5'
10924 3' -69.2 NC_002794.1 + 10804 0.66 0.449375
Target:  5'- aGCGUgGucugcaGCCGC-CGCGGCCCgUCgCCg -3'
miRNA:   3'- -CGCGgC------CGGCGcGCGCCGGGgGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 42498 0.66 0.449375
Target:  5'- cGCGgcCCGGCUGCGCGCccucguGGUCgaUCUgUCCg -3'
miRNA:   3'- -CGC--GGCCGGCGCGCG------CCGG--GGGgAGG- -5'
10924 3' -69.2 NC_002794.1 + 86323 0.66 0.449375
Target:  5'- gGCGUCgGGCCGgGCGgacCGGUCUaCCUCg -3'
miRNA:   3'- -CGCGG-CCGGCgCGC---GCCGGGgGGAGg -5'
10924 3' -69.2 NC_002794.1 + 1320 0.66 0.448558
Target:  5'- aGCGCCGccagcacGCC-CGCGCGGaacaggugaCCCacgCUCUCCg -3'
miRNA:   3'- -CGCGGC-------CGGcGCGCGCC---------GGG---GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 5122 0.66 0.448558
Target:  5'- aGCGCCcGCCGCcgucucgacggggGCgGCGGCCgCgCgUCCc -3'
miRNA:   3'- -CGCGGcCGGCG-------------CG-CGCCGGgG-GgAGG- -5'
10924 3' -69.2 NC_002794.1 + 161130 0.66 0.443673
Target:  5'- gGCGCgggCGGCCGCagagcgcgcgacgGCGCggugggacgcggcacGGCCgCCCgcgCCa -3'
miRNA:   3'- -CGCG---GCCGGCG-------------CGCG---------------CCGGgGGGa--GG- -5'
10924 3' -69.2 NC_002794.1 + 158097 0.66 0.441241
Target:  5'- gGCGCCGGCgG-GaGCGGCCgUCgUCg -3'
miRNA:   3'- -CGCGGCCGgCgCgCGCCGGgGGgAGg -5'
10924 3' -69.2 NC_002794.1 + 78658 0.66 0.441241
Target:  5'- gGCGUCgGGCC-CGgGCGGCUCCgg-CCg -3'
miRNA:   3'- -CGCGG-CCGGcGCgCGCCGGGGggaGG- -5'
10924 3' -69.2 NC_002794.1 + 95330 0.66 0.441241
Target:  5'- uCGgCGGCaccgaggagcaGCGgGCGGCCUUCC-CCg -3'
miRNA:   3'- cGCgGCCGg----------CGCgCGCCGGGGGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 15179 0.66 0.441241
Target:  5'- uCGCCGGCCGCuCcCGGCgCCCg--- -3'
miRNA:   3'- cGCGGCCGGCGcGcGCCGgGGGgagg -5'
10924 3' -69.2 NC_002794.1 + 94216 0.66 0.441241
Target:  5'- aGCGUgGGCgGgCGgGCGGCgguuagCCCgUCCg -3'
miRNA:   3'- -CGCGgCCGgC-GCgCGCCGg-----GGGgAGG- -5'
10924 3' -69.2 NC_002794.1 + 149753 0.66 0.441241
Target:  5'- aCGCCucguucuccccGCC-CGCGuCGGCuCCCCCgUCCg -3'
miRNA:   3'- cGCGGc----------CGGcGCGC-GCCG-GGGGG-AGG- -5'
10924 3' -69.2 NC_002794.1 + 1357 0.66 0.441241
Target:  5'- cGCGcCCGGcCCGCGgccCGCGuGCCgCCggCCc -3'
miRNA:   3'- -CGC-GGCC-GGCGC---GCGC-CGGgGGgaGG- -5'
10924 3' -69.2 NC_002794.1 + 888 0.66 0.441241
Target:  5'- aCGCCGGCUcguacaggcacaGCGcCGCGcGCaCgCCCUgCCg -3'
miRNA:   3'- cGCGGCCGG------------CGC-GCGC-CG-GgGGGA-GG- -5'
10924 3' -69.2 NC_002794.1 + 83994 0.66 0.441241
Target:  5'- cCGCCagGGCCuuguaGCGCGCGGUgaCCUgaUCCa -3'
miRNA:   3'- cGCGG--CCGG-----CGCGCGCCGggGGG--AGG- -5'
10924 3' -69.2 NC_002794.1 + 56173 0.66 0.433191
Target:  5'- cCGCCGGCCGUGC-CGGaCagguagCCCCa-- -3'
miRNA:   3'- cGCGGCCGGCGCGcGCC-Gg-----GGGGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.