miRNA display CGI


Results 41 - 60 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 42498 0.66 0.449375
Target:  5'- cGCGgcCCGGCUGCGCGCccucguGGUCgaUCUgUCCg -3'
miRNA:   3'- -CGC--GGCCGGCGCGCG------CCGG--GGGgAGG- -5'
10924 3' -69.2 NC_002794.1 + 10804 0.66 0.449375
Target:  5'- aGCGUgGucugcaGCCGC-CGCGGCCCgUCgCCg -3'
miRNA:   3'- -CGCGgC------CGGCGcGCGCCGGGgGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 168371 0.66 0.449375
Target:  5'- cGCGCCgaGGCCGCGC-CaGUCCaucauCCaUCCa -3'
miRNA:   3'- -CGCGG--CCGGCGCGcGcCGGGg----GG-AGG- -5'
10924 3' -69.2 NC_002794.1 + 160909 0.66 0.449375
Target:  5'- -gGCCcGCCGCGaccCGC-GCCUCCCgUCCc -3'
miRNA:   3'- cgCGGcCGGCGC---GCGcCGGGGGG-AGG- -5'
10924 3' -69.2 NC_002794.1 + 5660 0.66 0.449375
Target:  5'- cGCGCUccaGcGCCGCGCGCacccgccgGGCgCUCCggucgUCCa -3'
miRNA:   3'- -CGCGG---C-CGGCGCGCG--------CCGgGGGG-----AGG- -5'
10924 3' -69.2 NC_002794.1 + 94216 0.66 0.441241
Target:  5'- aGCGUgGGCgGgCGgGCGGCgguuagCCCgUCCg -3'
miRNA:   3'- -CGCGgCCGgC-GCgCGCCGg-----GGGgAGG- -5'
10924 3' -69.2 NC_002794.1 + 15179 0.66 0.441241
Target:  5'- uCGCCGGCCGCuCcCGGCgCCCg--- -3'
miRNA:   3'- cGCGGCCGGCGcGcGCCGgGGGgagg -5'
10924 3' -69.2 NC_002794.1 + 137303 0.66 0.425227
Target:  5'- cGCuGCUGGCgCGCuGCGCGaacGCCUaCUUCCa -3'
miRNA:   3'- -CG-CGGCCG-GCG-CGCGC---CGGGgGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 81188 0.66 0.433191
Target:  5'- cGCGCCGGUacuCGgacCGCagGGCCCggaCCUCCu -3'
miRNA:   3'- -CGCGGCCGgc-GC---GCG--CCGGGg--GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 113147 0.66 0.425227
Target:  5'- cGCGCCGaggacGCCGCGCcaccacucgccGCGaGCCgCCgCCaCCg -3'
miRNA:   3'- -CGCGGC-----CGGCGCG-----------CGC-CGG-GG-GGaGG- -5'
10924 3' -69.2 NC_002794.1 + 49869 0.66 0.433191
Target:  5'- aGCGCCcagaacGGCCGC-CGgGGCCggagacgccgUCCCagUCCg -3'
miRNA:   3'- -CGCGG------CCGGCGcGCgCCGG----------GGGG--AGG- -5'
10924 3' -69.2 NC_002794.1 + 194836 0.66 0.433191
Target:  5'- gGCauCCGGCC-CGCaCcacGCCCCCUUCCa -3'
miRNA:   3'- -CGc-GGCCGGcGCGcGc--CGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 129814 0.66 0.433191
Target:  5'- cGgGCCGGCaGCG-GCGGCCUgUUCUCg -3'
miRNA:   3'- -CgCGGCCGgCGCgCGCCGGG-GGGAGg -5'
10924 3' -69.2 NC_002794.1 + 95075 0.66 0.433191
Target:  5'- cGCGCCuGCgGUuCGCGGCCgCUUCUgCg -3'
miRNA:   3'- -CGCGGcCGgCGcGCGCCGG-GGGGAgG- -5'
10924 3' -69.2 NC_002794.1 + 60374 0.66 0.433191
Target:  5'- cCGCCGucgaCGCGCGCGGgCCCgaugCCCgcacaCCg -3'
miRNA:   3'- cGCGGCcg--GCGCGCGCC-GGG----GGGa----GG- -5'
10924 3' -69.2 NC_002794.1 + 56173 0.66 0.433191
Target:  5'- cCGCCGGCCGUGC-CGGaCagguagCCCCa-- -3'
miRNA:   3'- cGCGGCCGGCGCGcGCC-Gg-----GGGGagg -5'
10924 3' -69.2 NC_002794.1 + 78939 0.66 0.433191
Target:  5'- gGCGUCGGCUccgGCGuCGuCGGCgUCCCCg-- -3'
miRNA:   3'- -CGCGGCCGG---CGC-GC-GCCG-GGGGGagg -5'
10924 3' -69.2 NC_002794.1 + 158097 0.66 0.441241
Target:  5'- gGCGCCGGCgG-GaGCGGCCgUCgUCg -3'
miRNA:   3'- -CGCGGCCGgCgCgCGCCGGgGGgAGg -5'
10924 3' -69.2 NC_002794.1 + 78658 0.66 0.441241
Target:  5'- gGCGUCgGGCC-CGgGCGGCUCCgg-CCg -3'
miRNA:   3'- -CGCGG-CCGGcGCgCGCCGGGGggaGG- -5'
10924 3' -69.2 NC_002794.1 + 95330 0.66 0.441241
Target:  5'- uCGgCGGCaccgaggagcaGCGgGCGGCCUUCC-CCg -3'
miRNA:   3'- cGCgGCCGg----------CGCgCGCCGGGGGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.